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Author SHA1 Message Date
Heng Li 863b20773a Merge branch 'master' into dev-lh3 2021-03-18 16:11:43 -04:00
chhylp123 e6e6dbf7b3 remove unnecessary bin files of Hi-C 0.14.1 2021-03-18 13:44:30 -04:00
chhylp123 2db42c8c00 update version number 2021-03-18 13:18:46 -04:00
chhylp123 98a04c168a update r313 2021-03-18 05:26:33 -04:00
chhylp123 3b4953521f trio bug fixed 2021-03-16 02:36:19 -04:00
chhylp123 8e4b98f0a6 bubble label 2021-03-14 03:25:19 -04:00
chhylp123 4c2ce6fc6b update trans chain 2021-03-10 22:46:50 -05:00
chhylp123 8aa87fdce8 purge_dups for high het 2021-03-08 20:52:11 -05:00
Heng Li 8e98fb2276 Merge branch 'master' into dev-lh3 2021-03-02 19:27:44 -05:00
chhylp123 e8b92f7a40 backup for hic 2021-02-18 00:58:25 -05:00
chhylp123 d2ca12604b update r312 v0.14 2021-02-14 14:17:43 -05:00
chhylp123 d2bf15eba4 update r311 2021-02-14 13:32:02 -05:00
chhylp123 c47a1df4b0 fix chain bug 2021-02-14 12:47:51 -05:00
chhylp123 8855604d99 fix chain bug 2021-02-14 12:45:37 -05:00
chhylp123 dd48e3e15e Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2021-02-14 00:00:55 -05:00
chhylp123 02fa015e28 fix memory leak 2021-02-13 23:58:39 -05:00
chhylp123 18086e2c2e update 0.14-r310 2021-02-13 23:21:45 -05:00
chhylp123 5bb22f701c debug hic_hits 2021-02-09 18:40:49 -05:00
chhylp123 8467d58ef1 for v0.14 2021-02-09 13:00:23 -05:00
Heng Li 88f6261f7a Merge pull request #73 from molecules/patch-1 
Added citation
 2021-02-09 00:39:13 -05:00
Christopher Bottoms 4f5d404e2a Added citation 2021-02-08 14:19:17 -06:00
chhylp123 fda13cb0e4 update -z 2021-02-02 12:45:50 -05:00
chhylp123 02b9a3e109 hic multiple rounds 2021-01-31 18:49:08 -05:00
chhylp123 75ce7cd576 for v0.14-hic 2021-01-31 10:34:21 -05:00
Heng Li 205eadf346 r334: ignore a high-occ seed in a small window 2021-01-23 16:25:52 -05:00
Heng Li 61befd357a r333: also subsample high-freq mz during indexing 2021-01-22 23:17:25 -05:00
Heng Li 3b8f73fbab r332: increased mz sample dist from 200 to 500 2021-01-22 10:31:29 -05:00
Heng Li 8ff87685e5 updated Makefile dependencies 2021-01-21 11:58:50 -05:00
Heng Li da672118e5 r330: unimap heuristic for mz sampling 2021-01-21 11:05:37 -05:00
chhylp123 a009026e65 fix bug for broken bubbles 2021-01-15 07:33:13 -05:00
chhylp123 88f5b11f04 bubble graph 2021-01-01 04:50:42 -05:00
chhylp123 c545fd84c7 hic bubble 2020-12-29 09:15:44 -05:00
chhylp123 5d506e82c9 phasing 2020-12-28 03:35:17 -05:00
chhylp123 53a655d802 init partition 2020-12-26 19:01:24 -05:00
chhylp123 f3e390eee8 for hic 2020-12-17 02:53:31 -05:00
chhylp123 73b5ef6769 bubble phasing 2020-11-21 20:50:31 -05:00
chhylp123 3a1a3750e9 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2020-11-16 01:49:07 -05:00
chhylp123 d87314a07e resolve conflict 2020-11-16 01:44:12 -05:00
chhylp123 ab073aa1fc hic first 2020-11-14 23:35:32 -05:00
Heng Li 02f0b5dd22 r329: a bit code cleanup 2020-11-03 00:44:15 -05:00
Heng Li dcb583bd69 r328: use binomial heap for general cases 2020-11-01 22:49:06 -05:00
Heng Li 6fa4d44426 r327: choose up to 3 high-freq minimizers 2020-11-01 10:44:02 -05:00
Heng Li f02eb66e6a r326: select high-occ k-mers (experimental) 2020-10-29 22:36:54 -04:00
Heng Li f37c4e29fa a bit refactoring for the next change 2020-10-29 18:24:47 -04:00
Heng Li ef8c047559 removed unused ha_sketch 2020-10-29 11:28:43 -04:00
Heng Li eddb8173da added --min-hist-cnt for #49 2020-10-26 16:28:30 -04:00
chhylp123 35e3423f93 debug counting 2020-10-26 12:32:55 -04:00
chhylp123 0cc02035c5 HiC full index 2020-10-26 11:01:48 -04:00
chhylp123 b2b4624cea rerelease v0.13 v0.13 2020-10-22 14:24:59 -04:00
chhylp123 de4163e881 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 
merge README
 2020-10-21 22:03:43 -04:00