22 Commits

Author	SHA1	Message	Date
chhylp123	d4be231329	for -z	2021-02-02 13:15:59 -05:00
chhylp123	167f880377	for -z	2021-02-02 13:09:29 -05:00
chhylp123	89fcb35a64	for debugging	2020-10-11 14:32:33 -04:00
chhylp123	03cf0d475c	save bfore multiple overlaps	2020-08-23 08:46:33 -04:00
chhylp123	a25c37ed89	update k-mer peaks	2020-07-07 13:20:25 -04:00
Heng Li	c41aae0630	r211: added --write-paf/--write-ec/--skip-triobin	2020-04-08 22:32:54 -04:00
Heng Li	8efcdefcaf	r207: multiple input files were not working	2020-04-07 12:40:10 -04:00
Heng Li	adbc65feda	r201: automatically adjust -N	2020-04-05 22:43:01 -04:00
Heng Li	f0c53e9948	r192: estimate buffer memory	2020-04-05 11:17:12 -04:00
Heng Li	4fa3cbfd46	double the chunk size	2020-03-27 22:46:51 -04:00
Heng Li	5e16483b43	option to skip k-mer filtering	2020-03-27 22:32:39 -04:00
Heng Li	cb20e50219	disabled progress report	2020-03-27 17:05:56 -04:00
Heng Li	1bb174a04e	fixed missing read names ... Overlapping not working yet (now confirmed)	2020-03-27 12:51:08 -04:00
Heng Li	7271c106e4	reverted to the older k_mer_hit definition	2020-03-27 10:40:31 -04:00
Heng Li	10ed8b36ec	implemented ha_pt_get()	2020-03-26 23:00:00 -04:00
Heng Li	4aa4ebaf96	more unused code	2020-03-26 17:57:39 -04:00
Heng Li	387d6336d8	read from read store	2020-03-26 15:17:49 -04:00
Heng Li	0dd927bdce	write to hifiasm read store	2020-03-26 14:23:17 -04:00
Heng Li	c3bbaa8a39	prepare for integration with hifiasm	2020-03-26 11:33:52 -04:00
Heng Li	60d94790a2	fixed a memory leak	2020-03-25 23:52:09 -04:00
Heng Li	ff8194d291	position indexing apparently working	2020-03-25 23:44:15 -04:00
Heng Li	716713685c	renamed files for code cleanup	2020-03-25 19:59:17 -04:00