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534 Commits 11 Branches 54 Tags
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Author SHA1 Message Date
chhylp123 0613b18af9 r493 ->HiC/UL/Trans 2023-01-11 20:38:45 -05:00
chhylp123 a674110b23 fixed het/hom node bugs 2022-12-08 03:07:14 -05:00
chhylp123 a3b72457f0 cleaner assembly graph 2022-12-06 09:52:00 -05:00
chhylp123 786f8bdff0 r465 2022-12-02 09:40:25 -05:00
chhylp123 a4d6cebc32 slightly better assembly graph 2022-11-28 14:42:48 -05:00
chhylp123 9a454576e1 fixed memory issue within gen_single_khit 2022-11-25 20:49:14 -05:00
chhylp123 6de08fd91f debug assert 2022-11-25 15:20:32 -05:00
chhylp123 fc76af1285 fixed gap filling with UL 2022-11-25 11:46:37 -05:00
chhylp123 979d83f68d 0.17.4-r455 2022-11-17 18:05:35 -05:00
chhylp123 9747c42123 r454 2022-11-17 18:02:52 -05:00
chhylp123 553a8745cc bugs for bubble/hom assembly 2022-11-17 18:01:08 -05:00
chhylp123 1afecdcecc update README 2022-11-17 12:26:33 -05:00
chhylp123 152bae2dfb fix utg el bug 2022-11-17 12:18:40 -05:00
chhylp123 9831afaf26 code clean 2022-11-17 09:31:56 -05:00
chhylp123 2c7b164f11 tmp cache 2022-11-10 19:37:52 -05:00
chhylp123 46acc8a2f6 version with wrong realignment 2022-11-07 02:35:26 -05:00
chhylp123 612c1ab712 cuttoff before debugging 2022-11-05 09:03:23 -04:00
chhylp123 e66c003b65 cleaner graph 2022-11-01 21:44:13 -04:00
chhylp123 f4b6223fde cutoff-r426-avoid-tip 2022-10-31 15:18:52 -04:00
chhylp123 3d1787e57a ul_refine_alignment 2022-10-29 17:15:19 -04:00
chhylp123 249bee7304 done contain clean 2022-10-27 17:05:46 -04:00
chhylp123 df3e0eeaa3 read extract 2022-10-19 13:23:25 -04:00
chhylp123 3d65bef9de adjusted chain sc 2022-10-09 18:14:07 -04:00
chhylp123 1d0562ebd1 done second alignment 2022-10-09 16:59:54 -04:00
chhylp123 2443e63ef5 done chaining 2022-10-08 14:51:03 -04:00
chhylp123 f92cef38f2 uodate gchain 2022-10-07 15:14:08 -04:00
chhylp123 8a4d6a5f24 done alignemnt 2022-10-04 15:31:23 -04:00
chhylp123 68a74fb16d cigar collect 2022-10-02 14:38:49 -04:00
chhylp123 41437764f0 before window filling 2022-10-01 23:42:38 -04:00
chhylp123 bbd3394b4a lack final alignment 2022-10-01 19:53:02 -04:00
chhylp123 20a7dac82a backup for minimizer 2022-09-28 11:16:09 -04:00
chhylp123 236bc7b9ee backup for minimizer 2022-09-28 11:15:29 -04:00
chhylp123 4c873f9a66 large extension 2022-09-24 22:39:07 -04:00
chhylp123 a297105258 cal_exz_infi 2022-09-24 16:16:54 -04:00
chhylp123 38e00d2086 shared seeds 2022-09-23 22:17:38 -04:00
chhylp123 f4cc895fa0 update ed 2022-09-20 22:48:59 -04:00
chhylp123 4e7bb7eeb9 fix cigar 2022-09-18 23:17:58 -04:00
chhylp123 774c585562 infi ed 2022-09-16 21:34:36 -04:00
chhylp123 54b733ef2f inner define 2022-09-14 21:10:31 -04:00
chhylp123 69d0e18fe5 ed macro 2022-09-14 15:38:55 -04:00
chhylp123 2300dc63bb extension 2022-09-14 00:23:44 -04:00
chhylp123 5da05f308f extend ed alignment 2022-09-13 17:29:27 -04:00
chhylp123 ee51a6dddc seperate alignment 2022-09-04 00:18:51 -04:00
chhylp123 cc16626dfa debug cigar_offset 2022-09-01 23:16:08 -04:00
chhylp123 7b89478b2e code clean 2022-08-28 02:39:05 -04:00
chhylp123 8b7ca5f0c3 revised HiFi phasing 2022-08-23 10:36:35 -04:00
chhylp123 54465dd9ac tangle resolved 2022-08-16 23:35:56 -04:00
chhylp123 89e0d1aafa UL graph with graph cleaning 2022-08-02 15:48:16 -04:00
chhylp123 91de382bde before contain keeping 2022-07-27 10:41:57 -04:00
chhylp123 239f087af0 exact ul ovlp 2022-07-26 20:57:34 -04:00