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Author SHA1 Message Date
Heng Li 0dd927bdce write to hifiasm read store 2020-03-26 14:23:17 -04:00
Heng Li c3bbaa8a39 prepare for integration with hifiasm 2020-03-26 11:33:52 -04:00
Heng Li 60d94790a2 fixed a memory leak 2020-03-25 23:52:09 -04:00
Heng Li ff8194d291 position indexing apparently working 2020-03-25 23:44:15 -04:00
Heng Li 716713685c renamed files for code cleanup 2020-03-25 19:59:17 -04:00
Heng Li 5a6b97145a rename for naming consistency 2020-03-25 19:25:57 -04:00
Heng Li e116f6e09d position table; unfinished 2020-03-25 19:17:07 -04:00
Heng Li 585bbbe213 a bit code cleanup 2020-03-25 10:31:38 -04:00
Heng Li f8351e557a counting minimizers exactly 2020-03-25 09:50:32 -04:00
Heng Li 3e897560c4 minimizer filtering apparently works 2020-03-25 00:38:13 -04:00
Heng Li 84361ba6dd dense minimizer apparently works 2020-03-24 23:05:38 -04:00
Heng Li 3341cf20ba backup 2020-03-24 21:57:23 -04:00
Heng Li f70257c260 support HPC k-mer 2020-03-24 19:58:21 -04:00
Heng Li ec750cdd7d NOT WORKING! find hom and het peaks 2020-03-24 18:50:52 -04:00
Heng Li 2a848d254a k-mer histogram 2020-03-24 16:02:23 -04:00
Heng Li 64edb06e08 NOT WORKING!!! added all k-mer counter 2020-03-24 12:29:46 -04:00
Heng Li 398e73022b NOT WORKING!!! removed small_hash_table 2020-03-24 00:57:00 -04:00
Heng Li 59a9d62df9 NOT WORKING!!! backup only 2020-03-24 00:44:56 -04:00
Heng Li e6ef2fb56f put the rev bit on readID 2020-03-23 10:55:30 -04:00
Heng Li 3a27d104c6 replaced khash with khashl 2020-03-23 10:21:46 -04:00
Heng Li cfb0a5c8ec reduced the position to 32 bits 2020-03-23 09:54:42 -04:00
chhylp123 3c1d3cf6a1 disable debug v0.3 2020-03-23 00:25:20 -04:00
chhylp123 ee2573a05c Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2020-03-22 18:32:47 -04:00
chhylp123 d3cb016aba Update README 2020-03-22 18:31:59 -04:00
chhylp123 670bd10093 update man 2020-03-22 18:01:04 -04:00
chhylp123 90e290636a code clean 2020-03-22 17:06:36 -04:00
chhylp123 c72d419711 for hifiasm 3.0 2020-03-22 16:54:32 -04:00
chhylp123 4536141b9a update README for Redwood 
update README for Redwood
 2020-03-04 14:58:04 -05:00
chhylp123 6ae51c84f6 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 0.2.0 2020-02-07 15:00:14 -05:00
chhylp123 6246132702 update for 0.2.0 2020-02-07 14:52:14 -05:00
Heng Li 0a3fdd9599 Fixed a minor typo in README 2020-01-14 16:50:30 -05:00
chhylp123 6edf54048c update N50 N0.1.0 2020-01-14 11:09:38 -05:00
chhylp123 c63ce670f7 improved N50 2020-01-14 10:59:51 -05:00
chhylp123 387c64c5fc test contribution 2020-01-07 03:49:15 +08:00
Haoyu Cheng 67f1173eb6 update readme 2020-01-07 03:40:53 +08:00
Heng Li cb065dfa0e Merge pull request #4 from lh3/update-readme 
Changed the description of the output
0.1.0 		2020-01-04 12:56:52 -05:00
Heng Li 8b36dcb3d3 description of the output 2020-01-04 12:56:06 -05:00
Haoyu Cheng 562a990934 remove tmp files 2020-01-04 12:27:52 +08:00
Haoyu Cheng e7fa1554aa update readme 2020-01-04 12:16:35 +08:00
Haoyu Cheng 39fb70b49c update readme 2020-01-04 12:15:33 +08:00
Haoyu Cheng 03c06781a0 update README 2020-01-04 12:13:35 +08:00
Haoyu Cheng 180785a7ce update readme 2020-01-04 12:11:21 +08:00
Haoyu Cheng 34ac643038 update README 2020-01-04 12:10:08 +08:00
Haoyu Cheng e17bed62c0 update readme 2020-01-04 12:07:24 +08:00
Haoyu Cheng 7ecd489edc update man-page 2020-01-04 12:01:35 +08:00
Haoyu Cheng d8416873f3 upadate man-page and readme 2020-01-04 11:54:08 +08:00
Haoyu Cheng 1e46798bfb update readme and help information 2020-01-02 08:58:50 +08:00
chhylp123 36b42c2d83 Merge pull request #3 from lh3/lh3-fix 
Changed output file names
 2019-12-31 07:06:11 -05:00
Heng Li 1e71947a23 bumped version number to 0.1.0 2019-12-30 12:20:07 -05:00
Heng Li 4ea12b651f fixed a typo 2019-12-30 12:17:15 -05:00