204 Commits

Author	SHA1	Message	Date
chhylp123	98a04c168a	update r313	2021-03-18 05:26:33 -04:00
chhylp123	3b4953521f	trio bug fixed	2021-03-16 02:36:19 -04:00
chhylp123	8e4b98f0a6	bubble label	2021-03-14 03:25:19 -04:00
chhylp123	4c2ce6fc6b	update trans chain	2021-03-10 22:46:50 -05:00
chhylp123	8aa87fdce8	purge_dups for high het	2021-03-08 20:52:11 -05:00
Heng Li	8e98fb2276	Merge branch 'master' into dev-lh3	2021-03-02 19:27:44 -05:00
chhylp123	e8b92f7a40	backup for hic	2021-02-18 00:58:25 -05:00
chhylp123	d2bf15eba4	update r311	2021-02-14 13:32:02 -05:00
chhylp123	8855604d99	fix chain bug	2021-02-14 12:45:37 -05:00
chhylp123	02fa015e28	fix memory leak	2021-02-13 23:58:39 -05:00
chhylp123	18086e2c2e	update 0.14-r310	2021-02-13 23:21:45 -05:00
chhylp123	5bb22f701c	debug hic_hits	2021-02-09 18:40:49 -05:00
chhylp123	8467d58ef1	for v0.14	2021-02-09 13:00:23 -05:00
chhylp123	75ce7cd576	for v0.14-hic	2021-01-31 10:34:21 -05:00
chhylp123	a009026e65	fix bug for broken bubbles	2021-01-15 07:33:13 -05:00
chhylp123	88f5b11f04	bubble graph	2021-01-01 04:50:42 -05:00
chhylp123	c545fd84c7	hic bubble	2020-12-29 09:15:44 -05:00
chhylp123	5d506e82c9	phasing	2020-12-28 03:35:17 -05:00
chhylp123	53a655d802	init partition	2020-12-26 19:01:24 -05:00
chhylp123	f3e390eee8	for hic	2020-12-17 02:53:31 -05:00
chhylp123	ab073aa1fc	hic first	2020-11-14 23:35:32 -05:00
Heng Li	ef8c047559	removed unused ha_sketch	2020-10-29 11:28:43 -04:00
chhylp123	0cc02035c5	HiC full index	2020-10-26 11:01:48 -04:00
chhylp123	b2b4624cea	rerelease v0.13	2020-10-22 14:24:59 -04:00
chhylp123	91d4915da7	release v0.13	2020-10-21 21:57:43 -04:00
chhylp123	04f94514ee	fix circle	2020-10-19 19:51:17 -04:00
chhylp123	b1f844801a	fix c->l bug	2020-10-19 16:39:53 -04:00
chhylp123	e5d503ea65	update polishing	2020-10-19 13:22:45 -04:00
chhylp123	9d4e3b3283	update polishing	2020-10-18 17:59:31 -04:00
chhylp123	753ea81194	reomve redundancy	2020-10-16 18:08:12 -04:00
chhylp123	89fcb35a64	for debugging	2020-10-11 14:32:33 -04:00
chhylp123	03cf0d475c	save bfore multiple overlaps	2020-08-23 08:46:33 -04:00
chhylp123	a8aa37d201	fix makefile	2020-08-05 17:45:23 -04:00
chhylp123	320dc58127	fix bug at r_utg	2020-08-04 16:43:50 -04:00
chhylp123	9d659fd2e0	update v0.10	2020-07-31 12:23:25 -04:00
chhylp123	ace34ae2b8	for high-het and coverage	2020-07-28 13:07:35 -04:00
chhylp123	952471657f	change max coverage of pri-range	2020-07-18 17:40:58 -04:00
chhylp123	fda858f9e7	update coverage	2020-07-13 22:34:26 -04:00
chhylp123	c01b593d7c	using coverage	2020-07-12 16:03:01 -04:00
chhylp123	a25c37ed89	update k-mer peaks	2020-07-07 13:20:25 -04:00
chhylp123	2e56ef7db5	apply coverage to purge_dups	2020-07-06 10:02:03 -04:00
chhylp123	449950cddb	update readme	2020-06-27 10:57:22 -04:00
chhylp123	71f6c93d58	add options	2020-06-08 17:51:36 -04:00
Heng Li	eddbc61952	r254: added --ex-list and --ex-iter	2020-06-03 20:46:34 -04:00
Heng Li	e247c5f042	r253: Merge branch 'master' into dev-lh3	2020-05-23 21:43:22 -04:00
chhylp123	d36e1e7782	fixed bugs for trio-binning	2020-05-17 11:53:12 -04:00
Heng Li	3364a29b87	r249: make max overlap error rate CLI options	2020-05-06 01:16:50 -04:00
chhylp123	7f6725ead3	expose purge_dups	2020-04-18 00:45:47 -04:00
Heng Li	85c57fd087	r246: made purge_dups optional for trio binning	2020-04-15 23:57:18 -04:00
Heng Li	2d985569f1	Merge branch 'master' into dev-lh3	2020-04-12 18:57:42 -04:00