xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-15 12:47:57 +08:00
Code Issues Packages Projects Releases Wiki Activity
620 Commits 11 Branches 54 Tags
358b090e2046b4d71f159439a8f2f13d80fd8e7f
Commit Graph

620 Commits

This Branch
This Branch
All Branches
Author SHA1 Message Date
chhylp123
358b090e20 fix scaf bugs 2024-04-27 07:58:49 -04:00
chhylp123
1ac574adc7 Merge pull request #553 from chhylp123/hifiasm_dev_debug 
fix bubble issue
0.19.8 		2023-11-06 00:10:06 -05:00
chhylp123
61ceb3a4e1 fix bubble issue 2023-11-06 00:09:38 -05:00
chhylp123
7f6d36b2c4 Merge pull request #540 from chhylp123/hifiasm_dev_debug 
fix bug for gen_contain_consensus_chain
 2023-10-22 13:24:28 -04:00
chhylp123
4ca8951f9d fix bug for gen_contain_consensus_chain 2023-10-22 13:23:27 -04:00
chhylp123
40e2a48706 Merge pull request #535 from chhylp123/hifiasm_dev_debug 
add scaffolding
0.19.7 		2023-10-10 12:41:10 -04:00
chhylp123
281ae6ba89 add scaffolding 2023-10-10 12:40:29 -04:00
chhylp123
e974b22ac0 Merge pull request #521 from chhylp123/hifiasm_dev_debug 
checkpoint for scaffolding
 2023-09-15 13:00:13 -04:00
chhylp123
c7685e6f19 checkpoint for scaffolding 2023-09-15 12:58:34 -04:00
chhylp123
94a284b430 Merge pull request #503 from chhylp123/hifiasm_dev_debug 
disable multiple assertions
0.19.6 		2023-08-17 19:59:13 -04:00
chhylp123
858b95a3bb disable multiple assertions 2023-08-17 19:58:35 -04:00
chhylp123
30d2ee065e Merge pull request #482 from chhylp123/hifiasm_dev_debug 
fix filter_short_ulalignments
 2023-07-19 19:12:10 -04:00
chhylp123
64091a76a5 fix filter_short_ulalignments 2023-07-19 19:11:37 -04:00
chhylp123
d91fc50058 Merge pull request #462 from chhylp123/hifiasm_dev_debug 
trio-dual/bug for hic phasing
 2023-05-31 14:55:16 -04:00
chhylp123
adeb2c603d trio-dual/bug for hic phasing 2023-05-31 14:54:50 -04:00
chhylp123
abff5fae04 Merge pull request #457 from chhylp123/hifiasm_dev_debug 
remove ksw2 from makefile
 2023-05-12 20:57:45 -04:00
chhylp123
44475e2665 remove ksw2 from makefile 2023-05-12 20:57:11 -04:00
chhylp123
2cc990ed22 Merge pull request #455 from chhylp123/hifiasm_dev_debug 
fix memory leak of print_utg
 2023-05-12 11:32:03 -04:00
chhylp123
2c18ec30da fix memory leak of print_utg 2023-05-12 11:31:34 -04:00
chhylp123
5bddae4ae9 Merge pull request #446 from chhylp123/hifiasm_dev_debug 
fixed missing/false duplication for diploid asm
0.19.5 		2023-04-17 19:58:31 -04:00
chhylp123
18b649aadb fixed missing/false duplication for diploid asm 2023-04-17 19:58:00 -04:00
chhylp123
fbfcf72eb3 Merge pull request #445 from chhylp123/hifiasm_dev_debug 
Hifiasm dev debug
 2023-04-14 16:44:10 -04:00
chhylp123
0efcc14499 fix chain spliting bug 2023-04-14 16:43:41 -04:00
chhylp123
84e642d20d fix bubble on-the-fly 2023-04-13 10:16:14 -04:00
chhylp123
b49b4a6cc7 Merge pull request #438 from chhylp123/hifiasm_dev_debug 
Hifiasm dev debug
0.19.4 		2023-04-06 23:18:26 -04:00
chhylp123
7e855ba5e2 update README 2023-04-06 23:16:59 -04:00
chhylp123
5df5892f33 update for rescuing missing contigs 2023-04-06 23:14:41 -04:00
chhylp123
00959dfdd9 Merge pull request #430 from chhylp123/hifiasm_dev_debug 
0.19.2->0.19.3
0.19.3 		2023-03-22 12:26:41 -04:00
chhylp123
503cd0f7cc 0.19.2->0.19.3 2023-03-22 12:25:39 -04:00
chhylp123
00ad7458c3 Merge pull request #429 from chhylp123/hifiasm_dev_debug 
avoid misassemblies; better polyploidy graph
 2023-03-22 12:24:31 -04:00
chhylp123
86b7dd424a avoid misassemblies; better polyploidy graph 2023-03-22 12:23:53 -04:00
chhylp123
b763e1ff76 Merge pull request #422 from chhylp123/hifiasm_dev_debug 
disable postjoin for the ul assembly
0.19.2 		2023-03-13 15:44:45 -04:00
chhylp123
d4773a497f disable postjoin for the ul assembly 2023-03-13 15:43:22 -04:00
chhylp123
7bb366688e Merge pull request #421 from chhylp123/hifiasm_dev_debug 
Hifiasm dev debug
0.19.1 		2023-03-13 11:14:38 -04:00
chhylp123
f67faa9c34 path-max and path-min to avoid misassemblies 2023-03-13 11:13:57 -04:00
chhylp123
3407c7029e coverage adjustment for polyploidy 2023-03-12 17:02:29 -04:00
chhylp123
f69166ee3b Merge pull request #420 from chhylp123/hifiasm_dev_debug 
Hifiasm dev debug
 2023-03-10 23:44:34 -05:00
chhylp123
2218bac8aa clean output 2023-03-10 23:42:29 -05:00
chhylp123
b533067835 enable dbg-ovec 2023-03-10 23:30:24 -05:00
chhylp123
fa663a9680 Merge pull request #419 from chhylp123/hifiasm_dev_debug 
Hifiasm dev debug
0.19.0 		2023-03-10 19:34:50 -05:00
chhylp123
384b721d84 clean output 2023-03-10 15:46:23 -05:00
chhylp123
8b79a3f22e disable function for tangles with low-coverage ul 2023-03-10 15:34:10 -05:00
chhylp123
af4be8ca1a disable integer correction; disable contain dedup 2023-03-10 09:12:07 -05:00
chhylp123
85c643e85d clean contained read; fixed for deep_graph_clean 2023-03-07 15:28:24 -05:00
chhylp123
8a00c6c5f4 Merge pull request #414 from chhylp123/hifiasm_dev_debug 
better resolution for complex regions
 2023-02-27 09:36:46 -05:00
chhylp123
a0f2f70d91 better resolution for complex regions 2023-02-27 09:35:50 -05:00
chhylp123
ad4ff5550b Merge pull request #411 from chhylp123/hifiasm_dev_debug 
bug fixed for mask calculation
0.18.9 		2023-02-24 00:37:36 -05:00
chhylp123
04f660fd8c bug fixed for mask calculation 2023-02-24 00:36:52 -05:00
chhylp123
dd5f368fe6 Merge pull request #409 from chhylp123/hifiasm_dev_debug 
Hifiasm dev debug
0.18.8 		2023-02-21 20:23:31 -05:00
chhylp123
2b4b4f29e0 r525 2023-02-21 20:22:56 -05:00