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Author	SHA1	Message	Date
chhylp123	46e899bbae	backup r321	2021-04-01 21:02:57 -04:00
chhylp123	0605aa1961	r317	2021-03-27 02:46:48 -04:00
chhylp123	24a19d7976	more accurate purging	2021-03-26 18:07:30 -04:00
chhylp123	d89a630ff3	update contig flipping	2021-03-25 03:03:19 -04:00
chhylp123	9e3e1e8bab	update r351 0.14.2	2021-03-20 23:08:55 -04:00
chhylp123	ede6ccef00	fix misassemblies	2021-03-20 18:36:02 -04:00
chhylp123	e6e6dbf7b3	remove unnecessary bin files of Hi-C 0.14.1	2021-03-18 13:44:30 -04:00
chhylp123	2db42c8c00	update version number	2021-03-18 13:18:46 -04:00
chhylp123	98a04c168a	update r313	2021-03-18 05:26:33 -04:00
chhylp123	3b4953521f	trio bug fixed	2021-03-16 02:36:19 -04:00
chhylp123	8e4b98f0a6	bubble label	2021-03-14 03:25:19 -04:00
chhylp123	4c2ce6fc6b	update trans chain	2021-03-10 22:46:50 -05:00
chhylp123	8aa87fdce8	purge_dups for high het	2021-03-08 20:52:11 -05:00
chhylp123	e8b92f7a40	backup for hic	2021-02-18 00:58:25 -05:00
chhylp123	d2ca12604b	update r312 v0.14	2021-02-14 14:17:43 -05:00
chhylp123	d2bf15eba4	update r311	2021-02-14 13:32:02 -05:00
chhylp123	c47a1df4b0	fix chain bug	2021-02-14 12:47:51 -05:00
chhylp123	8855604d99	fix chain bug	2021-02-14 12:45:37 -05:00
chhylp123	dd48e3e15e	Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly	2021-02-14 00:00:55 -05:00
chhylp123	02fa015e28	fix memory leak	2021-02-13 23:58:39 -05:00
chhylp123	18086e2c2e	update 0.14-r310	2021-02-13 23:21:45 -05:00
chhylp123	5bb22f701c	debug hic_hits	2021-02-09 18:40:49 -05:00
chhylp123	8467d58ef1	for v0.14	2021-02-09 13:00:23 -05:00
Heng Li	88f6261f7a	Merge pull request #73 from molecules/patch-1 ... Added citation	2021-02-09 00:39:13 -05:00
Christopher Bottoms	4f5d404e2a	Added citation	2021-02-08 14:19:17 -06:00
chhylp123	fda13cb0e4	update -z	2021-02-02 12:45:50 -05:00
chhylp123	02b9a3e109	hic multiple rounds	2021-01-31 18:49:08 -05:00
chhylp123	75ce7cd576	for v0.14-hic	2021-01-31 10:34:21 -05:00
Heng Li	8ff87685e5	updated Makefile dependencies	2021-01-21 11:58:50 -05:00
chhylp123	a009026e65	fix bug for broken bubbles	2021-01-15 07:33:13 -05:00
chhylp123	88f5b11f04	bubble graph	2021-01-01 04:50:42 -05:00
chhylp123	c545fd84c7	hic bubble	2020-12-29 09:15:44 -05:00
chhylp123	5d506e82c9	phasing	2020-12-28 03:35:17 -05:00
chhylp123	53a655d802	init partition	2020-12-26 19:01:24 -05:00
chhylp123	f3e390eee8	for hic	2020-12-17 02:53:31 -05:00
chhylp123	73b5ef6769	bubble phasing	2020-11-21 20:50:31 -05:00
chhylp123	3a1a3750e9	Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly	2020-11-16 01:49:07 -05:00
chhylp123	d87314a07e	resolve conflict	2020-11-16 01:44:12 -05:00
chhylp123	ab073aa1fc	hic first	2020-11-14 23:35:32 -05:00
Heng Li	eddb8173da	added --min-hist-cnt for #49	2020-10-26 16:28:30 -04:00
chhylp123	35e3423f93	debug counting	2020-10-26 12:32:55 -04:00
chhylp123	0cc02035c5	HiC full index	2020-10-26 11:01:48 -04:00
chhylp123	b2b4624cea	rerelease v0.13 v0.13	2020-10-22 14:24:59 -04:00
chhylp123	de4163e881	Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly ... merge README	2020-10-21 22:03:43 -04:00
chhylp123	53adde2b37	fix conflict	2020-10-21 22:01:07 -04:00
chhylp123	91d4915da7	release v0.13	2020-10-21 21:57:43 -04:00
chhylp123	04f94514ee	fix circle	2020-10-19 19:51:17 -04:00
chhylp123	b1f844801a	fix c->l bug	2020-10-19 16:39:53 -04:00
chhylp123	e5d503ea65	update polishing	2020-10-19 13:22:45 -04:00
chhylp123	9d4e3b3283	update polishing	2020-10-18 17:59:31 -04:00