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Author SHA1 Message Date
chhylp123 5d506e82c9 phasing 2020-12-28 03:35:17 -05:00
chhylp123 53a655d802 init partition 2020-12-26 19:01:24 -05:00
chhylp123 f3e390eee8 for hic 2020-12-17 02:53:31 -05:00
chhylp123 73b5ef6769 bubble phasing 2020-11-21 20:50:31 -05:00
chhylp123 3a1a3750e9 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2020-11-16 01:49:07 -05:00
chhylp123 d87314a07e resolve conflict 2020-11-16 01:44:12 -05:00
chhylp123 ab073aa1fc hic first 2020-11-14 23:35:32 -05:00
chhylp123 35e3423f93 debug counting 2020-10-26 12:32:55 -04:00
chhylp123 0cc02035c5 HiC full index 2020-10-26 11:01:48 -04:00
chhylp123 b2b4624cea rerelease v0.13 2020-10-22 14:24:59 -04:00
chhylp123 de4163e881 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 
merge README
 2020-10-21 22:03:43 -04:00
chhylp123 53adde2b37 fix conflict 2020-10-21 22:01:07 -04:00
chhylp123 91d4915da7 release v0.13 2020-10-21 21:57:43 -04:00
chhylp123 04f94514ee fix circle 2020-10-19 19:51:17 -04:00
chhylp123 b1f844801a fix c->l bug 2020-10-19 16:39:53 -04:00
chhylp123 e5d503ea65 update polishing 2020-10-19 13:22:45 -04:00
chhylp123 9d4e3b3283 update polishing 2020-10-18 17:59:31 -04:00
chhylp123 753ea81194 reomve redundancy 2020-10-16 18:08:12 -04:00
chhylp123 89fcb35a64 for debugging 2020-10-11 14:32:33 -04:00
chhylp123 7a314d1ef3 fix type in README 2020-08-27 23:57:48 -04:00
chhylp123 55f95c0191 fix typo 2020-08-26 00:25:42 -04:00
chhylp123 b629dd8556 freeze-0.12-r304 2020-08-23 23:38:04 -04:00
chhylp123 0a2559e4a0 freeze-r304 2020-08-23 23:36:45 -04:00
chhylp123 724990cbe7 freeze-r304 2020-08-23 23:34:36 -04:00
chhylp123 03cf0d475c save bfore multiple overlaps 2020-08-23 08:46:33 -04:00
chhylp123 90d3cb69b9 fix version number 2020-08-05 18:04:47 -04:00
chhylp123 927d66262b rerelase v0.11 2020-08-05 17:50:53 -04:00
chhylp123 e031c70d0f Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2020-08-05 17:46:17 -04:00
chhylp123 a8aa37d201 fix makefile 2020-08-05 17:45:23 -04:00
chhylp123 320dc58127 fix bug at r_utg 2020-08-04 16:43:50 -04:00
chhylp123 ef5ba0cc2c update help/man 2020-07-31 21:32:02 -04:00
chhylp123 8bdc21799c update READMEN 2020-07-31 12:42:27 -04:00
chhylp123 7c385e219a update version number 2020-07-31 12:36:37 -04:00
chhylp123 d92f9519ae Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2020-07-31 12:34:49 -04:00
chhylp123 6ca9d01f06 update version number 2020-07-31 12:28:30 -04:00
chhylp123 23f0a8b020 Merge pull request #23 from chhylp123/hifiasm_high_het 
Hifiasm high het
 2020-07-31 12:24:43 -04:00
chhylp123 9d659fd2e0 update v0.10 2020-07-31 12:23:25 -04:00
chhylp123 ace34ae2b8 for high-het and coverage 2020-07-28 13:07:35 -04:00
chhylp123 952471657f change max coverage of pri-range 2020-07-18 17:40:58 -04:00
chhylp123 88ab801717 update HA_VERSION 2020-07-13 22:45:49 -04:00
chhylp123 a309e610ca resolve conflict 2020-07-13 22:44:40 -04:00
chhylp123 fda858f9e7 update coverage 2020-07-13 22:34:26 -04:00
chhylp123 c01b593d7c using coverage 2020-07-12 16:03:01 -04:00
chhylp123 a25c37ed89 update k-mer peaks 2020-07-07 13:20:25 -04:00
chhylp123 2e56ef7db5 apply coverage to purge_dups 2020-07-06 10:02:03 -04:00
chhylp123 428cc01d10 update link 2020-06-27 15:33:49 -04:00
chhylp123 3481a2fe2b reorganize readme 2020-06-27 15:28:36 -04:00
chhylp123 e401f88e57 update test datasets 2020-06-27 13:03:46 -04:00
chhylp123 7a2e02cb77 fix typo 2020-06-27 12:56:02 -04:00
chhylp123 3a88079a6e update typo 2020-06-27 12:44:12 -04:00
chhylp123 be26acc0e0 update readme 2020-06-27 12:43:14 -04:00
chhylp123 03c9028848 update readme 2020-06-27 12:36:33 -04:00
chhylp123 0071251c82 update README 2020-06-27 12:35:47 -04:00
chhylp123 39cf3f5dd8 update README 2020-06-27 12:34:41 -04:00
chhylp123 acba806ce1 update readme 2020-06-27 12:30:57 -04:00
chhylp123 46987e792a update readme 2020-06-27 12:29:23 -04:00
chhylp123 1ec650e3e5 update readme 2020-06-27 12:27:16 -04:00
chhylp123 61657f4b29 update readme 2020-06-27 12:06:59 -04:00
chhylp123 35ee94f040 update README 2020-06-27 11:46:48 -04:00
chhylp123 ed137c2ac6 update readme 2020-06-27 11:38:08 -04:00
chhylp123 9cc97472d9 update readme 2020-06-27 11:25:21 -04:00
chhylp123 449950cddb update readme 2020-06-27 10:57:22 -04:00
chhylp123 71f6c93d58 add options 2020-06-08 17:51:36 -04:00
chhylp123 d36e1e7782 fixed bugs for trio-binning 2020-05-17 11:53:12 -04:00
chhylp123 7f6725ead3 expose purge_dups 2020-04-18 00:45:47 -04:00
chhylp123 57e979ca17 update for v0.5.0 2020-04-14 00:10:58 -04:00
chhylp123 4216384df6 update README 2020-04-12 20:59:49 -04:00
chhylp123 3120db1340 update README 2020-04-12 20:53:18 -04:00
chhylp123 69e8282b9a update README 2020-04-12 20:51:18 -04:00
chhylp123 b93baa3cbd update README 2020-04-12 20:46:54 -04:00
chhylp123 57b16e9e1f fix warning 2020-04-12 17:46:30 -04:00
chhylp123 b245e9a760 fix warning 2020-04-12 17:46:20 -04:00
chhylp123 20c6c1d2e6 update trio-binning 2020-04-10 23:32:15 -04:00
chhylp123 943b6947cb update purge_dup by LIS 2020-04-10 13:58:36 -04:00
chhylp123 a288415111 bug fixing for purge_dup 2020-04-08 16:55:04 -04:00
chhylp123 9cc563c7c6 do hap alignment in parallel 2020-04-07 11:18:28 -04:00
chhylp123 87fc103e63 fix small bug 2020-04-06 02:03:34 -04:00
chhylp123 c57b63653d Merge pull request #8 from chhylp123/flt-p 
for purge_dup
 2020-04-05 11:44:56 -04:00
chhylp123 ac3fcc339a for purge_dup 2020-04-05 11:10:56 -04:00
chhylp123 3c1d3cf6a1 disable debug 2020-03-23 00:25:20 -04:00
chhylp123 ee2573a05c Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2020-03-22 18:32:47 -04:00
chhylp123 d3cb016aba Update README 2020-03-22 18:31:59 -04:00
chhylp123 670bd10093 update man 2020-03-22 18:01:04 -04:00
chhylp123 90e290636a code clean 2020-03-22 17:06:36 -04:00
chhylp123 c72d419711 for hifiasm 3.0 2020-03-22 16:54:32 -04:00
chhylp123 4536141b9a update README for Redwood 
update README for Redwood
 2020-03-04 14:58:04 -05:00
chhylp123 6ae51c84f6 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2020-02-07 15:00:14 -05:00
chhylp123 6246132702 update for 0.2.0 2020-02-07 14:52:14 -05:00
chhylp123 6edf54048c update N50 2020-01-14 11:09:38 -05:00
chhylp123 c63ce670f7 improved N50 2020-01-14 10:59:51 -05:00
chhylp123 387c64c5fc test contribution 2020-01-07 03:49:15 +08:00
Haoyu Cheng 67f1173eb6 update readme 2020-01-07 03:40:53 +08:00
Haoyu Cheng 562a990934 remove tmp files 2020-01-04 12:27:52 +08:00
Haoyu Cheng e7fa1554aa update readme 2020-01-04 12:16:35 +08:00
Haoyu Cheng 39fb70b49c update readme 2020-01-04 12:15:33 +08:00
Haoyu Cheng 03c06781a0 update README 2020-01-04 12:13:35 +08:00
Haoyu Cheng 180785a7ce update readme 2020-01-04 12:11:21 +08:00
Haoyu Cheng 34ac643038 update README 2020-01-04 12:10:08 +08:00
Haoyu Cheng e17bed62c0 update readme 2020-01-04 12:07:24 +08:00
Haoyu Cheng 7ecd489edc update man-page 2020-01-04 12:01:35 +08:00