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Author	SHA1	Message	Date
chhylp123	676385cf8e	ont simplex support 0.21.0	2024-11-27 13:27:13 -05:00
chhylp123	80fa5ed436	ONT EC	2024-11-12 23:53:29 -05:00
chhylp123	6de4e14782	update before fly HPC	2024-10-29 14:59:52 -04:00
chhylp123	ade800990e	update for reference read hpc	2024-10-27 13:22:06 -04:00
chhylp123	fc98214321	update cite 0.20.0	2024-10-14 12:35:48 -04:00
chhylp123	382adb89c5	update README	2024-10-14 12:30:48 -04:00
chhylp123	6e33d972d0	update README	2024-10-14 12:29:35 -04:00
chhylp123	39a30a8d55	update README	2024-10-14 12:23:57 -04:00
chhylp123	b01614fd71	update README	2024-10-13 19:07:51 -04:00
chhylp123	63d51c3441	update README	2024-10-13 19:06:01 -04:00
chhylp123	49dd83df2a	fix memory issue	2024-10-13 18:47:05 -04:00
chhylp123	e8b18560a5	0.20.0-r631	2024-10-09 17:09:10 -04:00
chhylp123	d5f8a8a6c0	new ec model	2024-06-30 19:53:51 -04:00
chhylp123	70fd9a0b1f	keeping more telomeres 0.19.9	2024-05-06 04:02:20 -04:00
chhylp123	73dd5eeb5b	gen_telo_end_t	2024-04-28 15:11:21 -04:00
chhylp123	358b090e20	fix scaf bugs	2024-04-27 07:58:49 -04:00
chhylp123	1ac574adc7	Merge pull request #553 from chhylp123/hifiasm_dev_debug ... fix bubble issue 0.19.8	2023-11-06 00:10:06 -05:00
chhylp123	61ceb3a4e1	fix bubble issue	2023-11-06 00:09:38 -05:00
chhylp123	7f6d36b2c4	Merge pull request #540 from chhylp123/hifiasm_dev_debug ... fix bug for gen_contain_consensus_chain	2023-10-22 13:24:28 -04:00
chhylp123	4ca8951f9d	fix bug for gen_contain_consensus_chain	2023-10-22 13:23:27 -04:00
chhylp123	40e2a48706	Merge pull request #535 from chhylp123/hifiasm_dev_debug ... add scaffolding 0.19.7	2023-10-10 12:41:10 -04:00
chhylp123	281ae6ba89	add scaffolding	2023-10-10 12:40:29 -04:00
chhylp123	e974b22ac0	Merge pull request #521 from chhylp123/hifiasm_dev_debug ... checkpoint for scaffolding	2023-09-15 13:00:13 -04:00
chhylp123	c7685e6f19	checkpoint for scaffolding	2023-09-15 12:58:34 -04:00
chhylp123	94a284b430	Merge pull request #503 from chhylp123/hifiasm_dev_debug ... disable multiple assertions 0.19.6	2023-08-17 19:59:13 -04:00
chhylp123	858b95a3bb	disable multiple assertions	2023-08-17 19:58:35 -04:00
chhylp123	30d2ee065e	Merge pull request #482 from chhylp123/hifiasm_dev_debug ... fix filter_short_ulalignments	2023-07-19 19:12:10 -04:00
chhylp123	64091a76a5	fix filter_short_ulalignments	2023-07-19 19:11:37 -04:00
chhylp123	d91fc50058	Merge pull request #462 from chhylp123/hifiasm_dev_debug ... trio-dual/bug for hic phasing	2023-05-31 14:55:16 -04:00
chhylp123	adeb2c603d	trio-dual/bug for hic phasing	2023-05-31 14:54:50 -04:00
chhylp123	abff5fae04	Merge pull request #457 from chhylp123/hifiasm_dev_debug ... remove ksw2 from makefile	2023-05-12 20:57:45 -04:00
chhylp123	44475e2665	remove ksw2 from makefile	2023-05-12 20:57:11 -04:00
chhylp123	2cc990ed22	Merge pull request #455 from chhylp123/hifiasm_dev_debug ... fix memory leak of print_utg	2023-05-12 11:32:03 -04:00
chhylp123	2c18ec30da	fix memory leak of print_utg	2023-05-12 11:31:34 -04:00
chhylp123	5bddae4ae9	Merge pull request #446 from chhylp123/hifiasm_dev_debug ... fixed missing/false duplication for diploid asm 0.19.5	2023-04-17 19:58:31 -04:00
chhylp123	18b649aadb	fixed missing/false duplication for diploid asm	2023-04-17 19:58:00 -04:00
chhylp123	fbfcf72eb3	Merge pull request #445 from chhylp123/hifiasm_dev_debug ... Hifiasm dev debug	2023-04-14 16:44:10 -04:00
chhylp123	0efcc14499	fix chain spliting bug	2023-04-14 16:43:41 -04:00
chhylp123	84e642d20d	fix bubble on-the-fly	2023-04-13 10:16:14 -04:00
chhylp123	b49b4a6cc7	Merge pull request #438 from chhylp123/hifiasm_dev_debug ... Hifiasm dev debug 0.19.4	2023-04-06 23:18:26 -04:00
chhylp123	7e855ba5e2	update README	2023-04-06 23:16:59 -04:00
chhylp123	5df5892f33	update for rescuing missing contigs	2023-04-06 23:14:41 -04:00
chhylp123	00959dfdd9	Merge pull request #430 from chhylp123/hifiasm_dev_debug ... 0.19.2->0.19.3 0.19.3	2023-03-22 12:26:41 -04:00
chhylp123	503cd0f7cc	0.19.2->0.19.3	2023-03-22 12:25:39 -04:00
chhylp123	00ad7458c3	Merge pull request #429 from chhylp123/hifiasm_dev_debug ... avoid misassemblies; better polyploidy graph	2023-03-22 12:24:31 -04:00
chhylp123	86b7dd424a	avoid misassemblies; better polyploidy graph	2023-03-22 12:23:53 -04:00
chhylp123	b763e1ff76	Merge pull request #422 from chhylp123/hifiasm_dev_debug ... disable postjoin for the ul assembly 0.19.2	2023-03-13 15:44:45 -04:00
chhylp123	d4773a497f	disable postjoin for the ul assembly	2023-03-13 15:43:22 -04:00
chhylp123	7bb366688e	Merge pull request #421 from chhylp123/hifiasm_dev_debug ... Hifiasm dev debug 0.19.1	2023-03-13 11:14:38 -04:00
chhylp123	f67faa9c34	path-max and path-min to avoid misassemblies	2023-03-13 11:13:57 -04:00