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507 Commits 11 Branches 54 Tags
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Author SHA1 Message Date
chhylp123 68a74fb16d cigar collect 2022-10-02 14:38:49 -04:00
chhylp123 41437764f0 before window filling 2022-10-01 23:42:38 -04:00
chhylp123 bbd3394b4a lack final alignment 2022-10-01 19:53:02 -04:00
chhylp123 20a7dac82a backup for minimizer 2022-09-28 11:16:09 -04:00
chhylp123 236bc7b9ee backup for minimizer 2022-09-28 11:15:29 -04:00
chhylp123 4c873f9a66 large extension 2022-09-24 22:39:07 -04:00
chhylp123 a297105258 cal_exz_infi 2022-09-24 16:16:54 -04:00
chhylp123 38e00d2086 shared seeds 2022-09-23 22:17:38 -04:00
chhylp123 f4cc895fa0 update ed 2022-09-20 22:48:59 -04:00
chhylp123 4e7bb7eeb9 fix cigar 2022-09-18 23:17:58 -04:00
chhylp123 774c585562 infi ed 2022-09-16 21:34:36 -04:00
chhylp123 54b733ef2f inner define 2022-09-14 21:10:31 -04:00
chhylp123 69d0e18fe5 ed macro 2022-09-14 15:38:55 -04:00
chhylp123 2300dc63bb extension 2022-09-14 00:23:44 -04:00
chhylp123 5da05f308f extend ed alignment 2022-09-13 17:29:27 -04:00
chhylp123 ee51a6dddc seperate alignment 2022-09-04 00:18:51 -04:00
chhylp123 cc16626dfa debug cigar_offset 2022-09-01 23:16:08 -04:00
chhylp123 7b89478b2e code clean 2022-08-28 02:39:05 -04:00
chhylp123 8b7ca5f0c3 revised HiFi phasing 2022-08-23 10:36:35 -04:00
chhylp123 54465dd9ac tangle resolved 2022-08-16 23:35:56 -04:00
chhylp123 89e0d1aafa UL graph with graph cleaning 2022-08-02 15:48:16 -04:00
chhylp123 91de382bde before contain keeping 2022-07-27 10:41:57 -04:00
chhylp123 239f087af0 exact ul ovlp 2022-07-26 20:57:34 -04:00
chhylp123 33afa25398 UL graph done 2022-07-24 18:13:16 -04:00
chhylp123 138610b049 ul coordinates fixed 2022-06-25 21:52:56 -04:00
chhylp123 0a8c064734 read alignment extension debugging 2022-06-24 18:07:15 -04:00
chhylp123 a82e05c9f2 fix gap alignment extention 2022-06-23 22:11:28 -04:00
chhylp123 3934167770 integer correction update 2022-06-20 01:51:19 -04:00
chhylp123 a21bc8a336 correction done 2022-06-18 22:42:01 -04:00
chhylp123 7cf6d82115 init poa 2022-06-15 16:58:23 -04:00
chhylp123 98bb89227e integer correction 2022-06-07 16:56:28 -04:00
chhylp123 8f1c59a5da all alignments have done/been improved 2022-05-16 20:58:29 -04:00
chhylp123 74ad15846e small bugs fixed 2022-05-14 22:07:55 -04:00
chhylp123 832e43fe3b smaller cigar size 2022-05-12 18:31:31 -04:00
chhylp123 a2198891e7 smaller memory requirement 2022-05-12 16:15:58 -04:00
chhylp123 dd8888aa90 backup for memory issues 2022-05-05 19:35:06 -04:00
chhylp123 8a2bb0b112 memory debugging 2022-05-04 20:22:50 -04:00
chhylp123 e8399b18f1 fixed duplicated chaining issue 2022-05-03 17:35:43 -04:00
chhylp123 8138941a26 new realignment 2022-05-03 00:59:24 -04:00
chhylp123 fdf24d5589 fix memory bug/logic bug 2022-05-01 00:37:32 -04:00
chhylp123 3064e1373b better uovlp saving 2022-04-22 23:10:21 -04:00
chhylp123 d862711623 update graph chain 2022-04-16 22:17:52 -04:00
chhylp123 9c79bdfe7f UL_gdp 2022-04-13 16:15:03 -04:00
chhylp123 75f8048b18 UL g-alignment-v1 2022-03-26 18:51:46 -04:00
chhylp123 95eb2de2b9 roughly right chaining 2022-03-25 00:29:58 -04:00
chhylp123 60236cd967 debug uc_block_t 2022-03-21 22:00:30 -04:00
chhylp123 d3b9de4120 new gchain 2022-03-16 01:13:27 -04:00
chhylp123 9c6a3607d1 intergration correctio 2022-03-01 20:25:53 -05:00
chhylp123 0ce5a7ba5b integration/print het sites 2022-01-17 18:29:48 -05:00
chhylp123 7af0d85258 backup 2021-12-29 21:22:43 -05:00