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mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-21 06:48:12 +08:00
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633 Commits 11 Branches 54 Tags
6de4e147825cb2537cf600e5c744eb3192d10b9e
Commit Graph
82 Commits
Author SHA1 Message Date
chhylp123 6de4e14782 update before fly HPC 2024-10-29 14:59:52 -04:00
chhylp123 ade800990e update for reference read hpc 2024-10-27 13:22:06 -04:00
chhylp123 49dd83df2a fix memory issue 2024-10-13 18:47:05 -04:00
chhylp123 e8b18560a5 0.20.0-r631 2024-10-09 17:09:10 -04:00
chhylp123 d5f8a8a6c0 new ec model 2024-06-30 19:53:51 -04:00
chhylp123 86b7dd424a avoid misassemblies; better polyploidy graph 2023-03-22 12:23:53 -04:00
chhylp123 04f660fd8c bug fixed for mask calculation 2023-02-24 00:36:52 -05:00
chhylp123 3abd3793fb clean graph alignment 2023-02-20 14:50:55 -05:00
chhylp123 b55e4396d2 prt_dbg_gfa -> before transitive reduction 2023-02-17 11:00:15 -05:00
chhylp123 286b897881 r513 2023-02-16 00:04:06 -05:00
chhylp123 f2da12a2ad 508 —> futhur graph cleaning 2023-02-12 22:49:12 -05:00
chhylp123 7ad498f631 r495-reuse misjoin detection 2023-01-12 00:21:43 -05:00
chhylp123 0613b18af9 r493 ->HiC/UL/Trans 2023-01-11 20:38:45 -05:00
chhylp123 9a454576e1 fixed memory issue within gen_single_khit 2022-11-25 20:49:14 -05:00
chhylp123 6de08fd91f debug assert 2022-11-25 15:20:32 -05:00
chhylp123 2c7b164f11 tmp cache 2022-11-10 19:37:52 -05:00
chhylp123 46acc8a2f6 version with wrong realignment 2022-11-07 02:35:26 -05:00
chhylp123 612c1ab712 cuttoff before debugging 2022-11-05 09:03:23 -04:00
chhylp123 e66c003b65 cleaner graph 2022-11-01 21:44:13 -04:00
chhylp123 f4b6223fde cutoff-r426-avoid-tip 2022-10-31 15:18:52 -04:00
chhylp123 249bee7304 done contain clean 2022-10-27 17:05:46 -04:00
chhylp123 df3e0eeaa3 read extract 2022-10-19 13:23:25 -04:00
chhylp123 3d65bef9de adjusted chain sc 2022-10-09 18:14:07 -04:00
chhylp123 1d0562ebd1 done second alignment 2022-10-09 16:59:54 -04:00
chhylp123 2443e63ef5 done chaining 2022-10-08 14:51:03 -04:00
chhylp123 f92cef38f2 uodate gchain 2022-10-07 15:14:08 -04:00
chhylp123 8a4d6a5f24 done alignemnt 2022-10-04 15:31:23 -04:00
chhylp123 68a74fb16d cigar collect 2022-10-02 14:38:49 -04:00
chhylp123 41437764f0 before window filling 2022-10-01 23:42:38 -04:00
chhylp123 bbd3394b4a lack final alignment 2022-10-01 19:53:02 -04:00
chhylp123 20a7dac82a backup for minimizer 2022-09-28 11:16:09 -04:00
chhylp123 236bc7b9ee backup for minimizer 2022-09-28 11:15:29 -04:00
chhylp123 a297105258 cal_exz_infi 2022-09-24 16:16:54 -04:00
chhylp123 38e00d2086 shared seeds 2022-09-23 22:17:38 -04:00
chhylp123 f4cc895fa0 update ed 2022-09-20 22:48:59 -04:00
chhylp123 4e7bb7eeb9 fix cigar 2022-09-18 23:17:58 -04:00
chhylp123 774c585562 infi ed 2022-09-16 21:34:36 -04:00
chhylp123 54b733ef2f inner define 2022-09-14 21:10:31 -04:00
chhylp123 69d0e18fe5 ed macro 2022-09-14 15:38:55 -04:00
chhylp123 2300dc63bb extension 2022-09-14 00:23:44 -04:00
chhylp123 5da05f308f extend ed alignment 2022-09-13 17:29:27 -04:00
chhylp123 ee51a6dddc seperate alignment 2022-09-04 00:18:51 -04:00
chhylp123 cc16626dfa debug cigar_offset 2022-09-01 23:16:08 -04:00
chhylp123 7b89478b2e code clean 2022-08-28 02:39:05 -04:00
chhylp123 8b7ca5f0c3 revised HiFi phasing 2022-08-23 10:36:35 -04:00
chhylp123 74ad15846e small bugs fixed 2022-05-14 22:07:55 -04:00
chhylp123 832e43fe3b smaller cigar size 2022-05-12 18:31:31 -04:00
chhylp123 a2198891e7 smaller memory requirement 2022-05-12 16:15:58 -04:00
chhylp123 3064e1373b better uovlp saving 2022-04-22 23:10:21 -04:00
chhylp123 95eb2de2b9 roughly right chaining 2022-03-25 00:29:58 -04:00