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mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-11 03:40:57 +08:00
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166 Commits 11 Branches 54 Tags
78e8f2f28aad7dba76f01ab22008e5cb594decb5
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Author SHA1 Message Date
Heng Li 78e8f2f28a finish ha_get_new_candidates() 2020-03-27 11:46:53 -04:00
Heng Li 8dbb4140bd removed k_mer_pos_list_alloc 2020-03-27 11:27:36 -04:00
Heng Li 293f4b6b58 to replace get_new_candidates(); UNFINISHED! 2020-03-27 11:21:08 -04:00
Heng Li 7271c106e4 reverted to the older k_mer_hit definition 2020-03-27 10:40:31 -04:00
Heng Li 10ed8b36ec implemented ha_pt_get() 2020-03-26 23:00:00 -04:00
Heng Li 4aa4ebaf96 more unused code 2020-03-26 17:57:39 -04:00
Heng Li 814a3705e2 removed a few other unused functions 2020-03-26 16:33:28 -04:00
Heng Li 8f664f80ce removed the hifiasm FASTA/Q reader 2020-03-26 16:26:54 -04:00
Heng Li 79bc553da6 removed hifiasm hash table index 2020-03-26 16:10:01 -04:00
Heng Li 387d6336d8 read from read store 2020-03-26 15:17:49 -04:00
Heng Li 0dd927bdce write to hifiasm read store 2020-03-26 14:23:17 -04:00
Heng Li c3bbaa8a39 prepare for integration with hifiasm 2020-03-26 11:33:52 -04:00
Heng Li 60d94790a2 fixed a memory leak 2020-03-25 23:52:09 -04:00
Heng Li ff8194d291 position indexing apparently working 2020-03-25 23:44:15 -04:00
Heng Li 716713685c renamed files for code cleanup 2020-03-25 19:59:17 -04:00
Heng Li 5a6b97145a rename for naming consistency 2020-03-25 19:25:57 -04:00
Heng Li e116f6e09d position table; unfinished 2020-03-25 19:17:07 -04:00
Heng Li 585bbbe213 a bit code cleanup 2020-03-25 10:31:38 -04:00
Heng Li f8351e557a counting minimizers exactly 2020-03-25 09:50:32 -04:00
Heng Li 3e897560c4 minimizer filtering apparently works 2020-03-25 00:38:13 -04:00
Heng Li 84361ba6dd dense minimizer apparently works 2020-03-24 23:05:38 -04:00
Heng Li 3341cf20ba backup 2020-03-24 21:57:23 -04:00
Heng Li f70257c260 support HPC k-mer 2020-03-24 19:58:21 -04:00
Heng Li ec750cdd7d NOT WORKING! find hom and het peaks 2020-03-24 18:50:52 -04:00
Heng Li 2a848d254a k-mer histogram 2020-03-24 16:02:23 -04:00
Heng Li 64edb06e08 NOT WORKING!!! added all k-mer counter 2020-03-24 12:29:46 -04:00
Heng Li 398e73022b NOT WORKING!!! removed small_hash_table 2020-03-24 00:57:00 -04:00
Heng Li 59a9d62df9 NOT WORKING!!! backup only 2020-03-24 00:44:56 -04:00
Heng Li e6ef2fb56f put the rev bit on readID 2020-03-23 10:55:30 -04:00
Heng Li 3a27d104c6 replaced khash with khashl 2020-03-23 10:21:46 -04:00
Heng Li cfb0a5c8ec reduced the position to 32 bits 2020-03-23 09:54:42 -04:00
Heng Li 8b36dcb3d3 description of the output 2020-01-04 12:56:06 -05:00
Heng Li 1e71947a23 bumped version number to 0.1.0 2019-12-30 12:20:07 -05:00
Heng Li 4ea12b651f fixed a typo 2019-12-30 12:17:15 -05:00
Heng Li 3a61b1b0b0 changed the output file names 2019-12-30 12:01:54 -05:00
Heng Li 30eddefc57 main() should return 0 on success 2019-12-30 10:44:13 -05:00
Heng Li b7117af560 TAB to SPACE 2019-12-26 10:14:14 -05:00
Heng Li b787ebe195 TAB to SPACEs 2019-12-26 10:11:44 -05:00
Heng Li e6cdac9ea9 fixed a few harmless warnings 2019-12-26 10:06:58 -05:00
Heng Li 7fb4646beb added gitignore 2019-12-26 09:41:15 -05:00
Heng Li 03c8899a34 fixed clang warnings 2019-12-26 09:40:35 -05:00
Heng Li db7e31f90d Merge branch 'master' into new-mak 2019-11-22 15:01:28 -05:00
Heng Li cb3eecc5e0 added klib_unused to suppress kseq warnings 2019-11-22 14:47:54 -05:00
Heng Li 8ad76667f4 new Makefile 2019-11-22 14:43:37 -05:00
Heng Li b81b7f9213 Fixed a compiling error caused by UINT32_MAX 2019-11-22 14:36:37 -05:00