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Author SHA1 Message Date
chhylp123 7e06dec2d0 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 0.15.3 2021-06-09 20:11:54 -04:00
chhylp123 9dc530cbfb low hamming for sampels with low het rate 2021-06-09 20:10:50 -04:00
chhylp123 ca67e7a9b3 rollback 2021-05-31 18:16:20 -04:00
chhylp123 aa164949f2 backup phasing 2021-05-31 04:19:05 -04:00
chhylp123 e774a83be2 debug mbg 2021-05-30 09:02:25 -04:00
chhylp123 a39f01f4d8 haplotype popping 2021-05-24 19:43:50 -04:00
chhylp123 9e6dde7fb2 backpup 2021-05-22 10:48:49 -04:00
chhylp123 46c0157f79 new ovlp collect 2021-05-22 10:47:58 -04:00
chhylp123 626787ab8a complex cleaning 2021-05-20 17:03:18 -04:00
chhylp123 5c1680e998 fix missed ug when bubble popping 2021-05-19 10:16:23 -04:00
chhylp123 b12e008416 new somatic variant popping 2021-05-19 09:52:40 -04:00
chhylp123 be8e1e3117 sc debug 2021-05-17 00:12:41 -04:00
chhylp123 2bbac713ef init scaffold 2021-05-15 11:45:05 -04:00
chhylp123 4105dd360e correction 2021-05-11 13:01:06 -04:00
Heng Li 1f7d3f46c9 removed clang 2021-05-10 22:23:22 -04:00
Heng Li d4cc3551e8 added code of conduct 2021-05-10 21:49:48 -04:00
Heng Li 8187f177ec Merge branch 'master' of github.com:chhylp123/hifiasm 2021-05-10 21:48:31 -04:00
Heng Li c9b61dcd78 added CI 2021-05-10 21:48:18 -04:00
chhylp123 7918396d21 collect contig alignment + renew_utg bug fixed 2021-05-09 17:47:50 -04:00
chhylp123 03adce6202 k-mer idx for par 2021-05-06 21:31:40 -04:00
chhylp123 9ea4f6917f resolve centromere 2021-05-06 07:59:51 -04:00
chhylp123 24e5453781 bug fix 0.15.2 2021-05-02 14:16:36 -04:00
chhylp123 9c205c8271 resove tangle by hic 2021-04-30 22:44:48 -04:00
chhylp123 9b31d47379 exit(0) for --help 2021-04-28 23:10:51 -04:00
chhylp123 71e91f3fc2 assgin disconnected parts 2021-04-28 20:27:43 -04:00
chhylp123 2fc2268268 phasing improvement 2021-04-27 21:35:49 -04:00
chhylp123 11430d6a3b r329 2021-04-25 14:50:36 -04:00
chhylp123 1456686665 fast weight 2021-04-25 06:05:23 -04:00
chhylp123 80877b9d0d Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 0.15.1 2021-04-24 07:00:05 -04:00
chhylp123 e52e897113 clean code 2021-04-24 00:17:08 -04:00
chhylp123 c972c64b39 add "n-weight" 2021-04-24 00:03:36 -04:00
chhylp123 7b07e355b7 bug fix for bubble scanning 2021-04-23 20:40:43 -04:00
chhylp123 a5b29b00bd topo phasing 2021-04-22 22:38:52 -04:00
chhylp123 278efaa876 block phasing 2021-04-21 10:58:58 -04:00
chhylp123 475ebb8075 keep long range information 2021-04-20 01:29:15 -04:00
chhylp123 39c19618e8 backup hic 2021-04-18 21:57:16 -04:00
Heng Li dfd7720f5a clarify that hifiasm doesn't do scaffolding 2021-04-17 16:28:12 -04:00
Heng Li 325bcebf9c Merge branch 'doc-update' 
I will not create another PR for this...
 2021-04-17 16:07:49 -04:00
Heng Li a0e4cbf80a minor changes 2021-04-17 16:07:34 -04:00
Heng Li 2464297370 Merge pull request #101 from chhylp123/doc-update 
Updated README
 2021-04-17 16:03:48 -04:00
Heng Li d9c47e21db updated README 2021-04-17 16:01:32 -04:00
chhylp123 49ead1ef35 bub disable 0.15 2021-04-17 04:23:32 -04:00
chhylp123 4bc43cec92 bug fixed 2021-04-17 00:31:19 -04:00
chhylp123 efacf8e796 bug fixing 2021-04-16 22:26:28 -04:00
chhylp123 f8ee584291 code clean 2021-04-16 20:28:48 -04:00
chhylp123 1e86e3dc02 best flipping 2021-04-14 18:50:20 -04:00
chhylp123 67c7218264 fix distance bug 2021-04-13 01:18:49 -04:00
chhylp123 36afbce9bc update unitig distance 2021-04-12 04:54:06 -04:00
chhylp123 7235f6426f back_up_hic 2021-04-11 10:59:26 -04:00
chhylp123 8f733750c4 variant calling 2021-04-10 21:58:53 -04:00