11 Commits

Author	SHA1	Message	Date
Heng Li	c41aae0630	r211: added --write-paf/--write-ec/--skip-triobin	2020-04-08 22:32:54 -04:00
Heng Li	f0c53e9948	r192: estimate buffer memory	2020-04-05 11:17:12 -04:00
Heng Li	968b4caef9	r181: limit the max number of chains	2020-04-02 21:55:00 -04:00
Heng Li	3838482851	moved sorting to anchor.cpp for future changes	2020-04-02 19:18:29 -04:00
Heng Li	b7e5d1c4d3	r176: enabled the minimap2 chaining heuristic	2020-04-01 22:06:14 -04:00
Heng Li	7079a9f306	working on mid-sized test example	2020-03-27 16:55:28 -04:00
Heng Li	bd89bd500c	add disabled debugging code	2020-03-27 14:03:36 -04:00
Heng Li	30a70bc307	fixed wrong coordinate	2020-03-27 13:45:09 -04:00
Heng Li	1bb174a04e	fixed missing read names ... Overlapping not working yet (now confirmed)	2020-03-27 12:51:08 -04:00
Heng Li	78e8f2f28a	finish ha_get_new_candidates()	2020-03-27 11:46:53 -04:00
Heng Li	293f4b6b58	to replace get_new_candidates(); UNFINISHED!	2020-03-27 11:21:08 -04:00