 chhylp123
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d91fc50058
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Merge pull request #462 from chhylp123/hifiasm_dev_debug
trio-dual/bug for hic phasing
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2023-05-31 14:55:16 -04:00 |
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chhylp123
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adeb2c603d
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trio-dual/bug for hic phasing
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2023-05-31 14:54:50 -04:00 |
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chhylp123
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abff5fae04
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Merge pull request #457 from chhylp123/hifiasm_dev_debug
remove ksw2 from makefile
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2023-05-12 20:57:45 -04:00 |
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chhylp123
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44475e2665
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remove ksw2 from makefile
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2023-05-12 20:57:11 -04:00 |
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chhylp123
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2cc990ed22
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Merge pull request #455 from chhylp123/hifiasm_dev_debug
fix memory leak of print_utg
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2023-05-12 11:32:03 -04:00 |
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chhylp123
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2c18ec30da
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fix memory leak of print_utg
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2023-05-12 11:31:34 -04:00 |
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chhylp123
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5bddae4ae9
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Merge pull request #446 from chhylp123/hifiasm_dev_debug
fixed missing/false duplication for diploid asm
0.19.5
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2023-04-17 19:58:31 -04:00 |
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chhylp123
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18b649aadb
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fixed missing/false duplication for diploid asm
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2023-04-17 19:58:00 -04:00 |
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chhylp123
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fbfcf72eb3
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Merge pull request #445 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
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2023-04-14 16:44:10 -04:00 |
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chhylp123
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0efcc14499
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fix chain spliting bug
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2023-04-14 16:43:41 -04:00 |
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chhylp123
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84e642d20d
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fix bubble on-the-fly
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2023-04-13 10:16:14 -04:00 |
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chhylp123
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b49b4a6cc7
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Merge pull request #438 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
0.19.4
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2023-04-06 23:18:26 -04:00 |
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chhylp123
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7e855ba5e2
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update README
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2023-04-06 23:16:59 -04:00 |
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chhylp123
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5df5892f33
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update for rescuing missing contigs
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2023-04-06 23:14:41 -04:00 |
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chhylp123
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00959dfdd9
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Merge pull request #430 from chhylp123/hifiasm_dev_debug
0.19.2->0.19.3
0.19.3
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2023-03-22 12:26:41 -04:00 |
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chhylp123
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503cd0f7cc
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0.19.2->0.19.3
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2023-03-22 12:25:39 -04:00 |
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chhylp123
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00ad7458c3
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Merge pull request #429 from chhylp123/hifiasm_dev_debug
avoid misassemblies; better polyploidy graph
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2023-03-22 12:24:31 -04:00 |
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chhylp123
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86b7dd424a
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avoid misassemblies; better polyploidy graph
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2023-03-22 12:23:53 -04:00 |
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chhylp123
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b763e1ff76
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Merge pull request #422 from chhylp123/hifiasm_dev_debug
disable postjoin for the ul assembly
0.19.2
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2023-03-13 15:44:45 -04:00 |
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chhylp123
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d4773a497f
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disable postjoin for the ul assembly
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2023-03-13 15:43:22 -04:00 |
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chhylp123
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7bb366688e
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Merge pull request #421 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
0.19.1
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2023-03-13 11:14:38 -04:00 |
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chhylp123
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f67faa9c34
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path-max and path-min to avoid misassemblies
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2023-03-13 11:13:57 -04:00 |
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chhylp123
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3407c7029e
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coverage adjustment for polyploidy
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2023-03-12 17:02:29 -04:00 |
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chhylp123
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f69166ee3b
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Merge pull request #420 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
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2023-03-10 23:44:34 -05:00 |
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chhylp123
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2218bac8aa
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clean output
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2023-03-10 23:42:29 -05:00 |
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chhylp123
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b533067835
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enable dbg-ovec
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2023-03-10 23:30:24 -05:00 |
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chhylp123
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fa663a9680
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Merge pull request #419 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
0.19.0
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2023-03-10 19:34:50 -05:00 |
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chhylp123
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384b721d84
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clean output
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2023-03-10 15:46:23 -05:00 |
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chhylp123
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8b79a3f22e
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disable function for tangles with low-coverage ul
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2023-03-10 15:34:10 -05:00 |
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chhylp123
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af4be8ca1a
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disable integer correction; disable contain dedup
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2023-03-10 09:12:07 -05:00 |
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chhylp123
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85c643e85d
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clean contained read; fixed for deep_graph_clean
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2023-03-07 15:28:24 -05:00 |
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chhylp123
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8a00c6c5f4
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Merge pull request #414 from chhylp123/hifiasm_dev_debug
better resolution for complex regions
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2023-02-27 09:36:46 -05:00 |
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chhylp123
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a0f2f70d91
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better resolution for complex regions
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2023-02-27 09:35:50 -05:00 |
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chhylp123
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ad4ff5550b
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Merge pull request #411 from chhylp123/hifiasm_dev_debug
bug fixed for mask calculation
0.18.9
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2023-02-24 00:37:36 -05:00 |
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chhylp123
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04f660fd8c
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bug fixed for mask calculation
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2023-02-24 00:36:52 -05:00 |
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chhylp123
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dd5f368fe6
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Merge pull request #409 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
0.18.8
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2023-02-21 20:23:31 -05:00 |
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chhylp123
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2b4b4f29e0
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r525
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2023-02-21 20:22:56 -05:00 |
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chhylp123
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8ea2d5a622
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r523-phasing-across chains
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2023-02-21 15:44:45 -05:00 |
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chhylp123
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27f77dca29
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Merge pull request #401 from chhylp123/hifiasm_dev_debug
0.18.6 -> 0.18.7
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2023-02-20 23:42:20 -05:00 |
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chhylp123
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7d5c793109
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additional cluster for phasing
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2023-02-20 23:38:27 -05:00 |
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chhylp123
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3abd3793fb
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clean graph alignment
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2023-02-20 14:50:55 -05:00 |
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chhylp123
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b55e4396d2
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prt_dbg_gfa -> before transitive reduction
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2023-02-17 11:00:15 -05:00 |
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chhylp123
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fc598d71f6
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0.18.6 -> 0.18.7
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2023-02-16 12:16:24 -05:00 |
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chhylp123
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026cf97d61
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Merge pull request #400 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
0.18.7
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2023-02-16 00:09:39 -05:00 |
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chhylp123
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286b897881
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r513
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2023-02-16 00:04:06 -05:00 |
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chhylp123
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f2da12a2ad
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508 —> futhur graph cleaning
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2023-02-12 22:49:12 -05:00 |
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chhylp123
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1166b92eb4
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r502->additional alignment
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2023-01-25 09:39:41 -05:00 |
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chhylp123
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1dd82e7729
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Merge pull request #387 from chhylp123/hifiasm_dev_debug
r500
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2023-01-23 15:29:16 -05:00 |
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chhylp123
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78ef43ce8e
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r500
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2023-01-23 15:28:43 -05:00 |
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chhylp123
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6c91e8b0a7
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Merge pull request #386 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
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2023-01-23 15:26:38 -05:00 |
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