117 Commits

Include renames

Author	SHA1	Message	Date
Heng Li	3a61b1b0b0	changed the output file names	2019-12-30 12:01:54 -05:00
Haoyu Cheng	a60a2d7ddd	update help	2019-12-28 16:38:21 -05:00
Haoyu Cheng	ea248038c6	Update for overlaps	2019-12-28 16:18:50 -05:00
Haoyu Cheng	54c80d8400	README	2019-12-28 05:07:35 -05:00
Haoyu Cheng	1523d10291	README	2019-12-28 04:45:53 -05:00
Haoyu Cheng	9ef00f749a	update README	2019-12-26 14:44:11 -05:00
Haoyu Cheng	4ac9907e49	clean code	2019-12-26 02:26:24 -05:00
Haoyu Cheng	ada03ea388	final DP-based assembly	2019-11-13 20:18:11 -05:00
Haoyu Cheng	d5327fe9ee	phasing	2019-09-02 10:30:14 -04:00
Haoyu Cheng	3c0c201cdf	improve speed	2019-08-26 02:22:20 -04:00
Haoyu Cheng	6802d873cf	fix insertion bug	2019-07-18 03:02:58 -04:00
Haoyu Cheng	b553f3ac5e	POA	2019-07-01 09:08:25 -04:00
Haoyu Cheng	17553e0a42	S/L index&reads	2019-05-16 21:14:50 -04:00
Haoyu Cheng	45355a1103	Update position hash table	2019-05-14 17:02:03 -04:00
Haoyu Cheng	9302fc6058	Finish multiple thread counting	2019-05-12 02:16:20 -04:00
Haoyu Cheng	eee68408be	Using klib	2019-05-10 16:14:01 -04:00
Haoyu Cheng	0b209dd1e9	Input reads	2019-05-10 00:11:19 -04:00