22 Commits

Author	SHA1	Message	Date
Heng Li	03c8899a34	fixed clang warnings	2019-12-26 09:40:35 -05:00
Haoyu Cheng	4ac9907e49	clean code	2019-12-26 02:26:24 -05:00
Haoyu Cheng	1ead2d3081	M50 improved	2019-12-23 09:37:26 -05:00
Haoyu Cheng	06556e4a9b	backup without bundaries processing	2019-12-17 16:58:20 -05:00
Haoyu Cheng	90195293f1	for backup	2019-12-12 20:12:52 -05:00
Haoyu Cheng	9c25075fed	update for base-level alignment	2019-12-12 03:06:47 -05:00
Haoyu Cheng	f1cde019a9	for break points at chr11	2019-12-12 00:31:24 -05:00
Haoyu Cheng	09603432e5	fix bugs for overlaps of different length	2019-12-09 17:07:11 -05:00
Haoyu Cheng	3425bd020b	more cutting methods	2019-11-20 15:43:44 -05:00
Haoyu Cheng	e8ff0c1dbc	backup	2019-11-19 01:32:39 -05:00
Haoyu Cheng	ada03ea388	final DP-based assembly	2019-11-13 20:18:11 -05:00
Haoyu Cheng	d6c6a1fa11	DP	2019-09-07 21:25:11 -04:00
Haoyu Cheng	b57923d050	2019_9_5	2019-09-05 11:47:54 -04:00
Haoyu Cheng	d5327fe9ee	phasing	2019-09-02 10:30:14 -04:00
Haoyu Cheng	3c0c201cdf	improve speed	2019-08-26 02:22:20 -04:00
Haoyu Cheng	6802d873cf	fix insertion bug	2019-07-18 03:02:58 -04:00
Haoyu Cheng	ad8a4c9c65	full error correction	2019-07-14 21:13:50 -04:00
Haoyu Cheng	f508762557	resure alignment	2019-07-12 10:18:25 -04:00
Haoyu Cheng	3d88530385	debug	2019-07-09 22:15:58 -04:00
Haoyu Cheng	4eddb02dbd	prefilter	2019-07-09 15:11:04 -04:00
Haoyu Cheng	1892b4d2db	prefilter	2019-07-08 01:06:36 -04:00
Haoyu Cheng	87873d6323	edit distance based error correction	2019-07-07 03:44:59 -04:00