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76 Commits 11 Branches 54 Tags
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Author SHA1 Message Date
Haoyu Cheng ede8eb747b README 2019-12-26 16:01:08 -05:00
Haoyu Cheng f89d4d7201 README 2019-12-26 15:58:44 -05:00
Haoyu Cheng 3fa499ecde README 2019-12-26 15:57:04 -05:00
Haoyu Cheng 350bda5f76 README 2019-12-26 15:56:07 -05:00
Haoyu Cheng c5a191baeb README 2019-12-26 15:55:39 -05:00
Haoyu Cheng defebb73fd README 2019-12-26 15:54:09 -05:00
Haoyu Cheng a8df77962d README 2019-12-26 15:49:32 -05:00
Haoyu Cheng 4da7500e8b README 2019-12-26 15:47:46 -05:00
Haoyu Cheng cd16ad6617 README 2019-12-26 15:45:24 -05:00
Haoyu Cheng a1e32ee2a2 README 2019-12-26 15:43:58 -05:00
Haoyu Cheng cd2300907a README 2019-12-26 15:32:11 -05:00
Haoyu Cheng 57b30d967a README 2019-12-26 15:23:57 -05:00
Haoyu Cheng 53aba41bdd README 2019-12-26 15:20:33 -05:00
Haoyu Cheng 16ae545ee1 README 2019-12-26 14:56:21 -05:00
Haoyu Cheng f2c46290b2 README 2019-12-26 14:52:13 -05:00
Haoyu Cheng 9ef00f749a update README 2019-12-26 14:44:11 -05:00
Haoyu Cheng dc67fc6d2b test readme 2019-12-26 14:31:00 -05:00
Haoyu Cheng 53d1692331 fix TODO 2019-12-26 12:42:50 -05:00
chhylp123 7c2c0a5af3 Merge pull request #2 from lh3/fix-warnings 
Fixed compiler warnings
 2019-12-26 12:21:52 -05:00
Heng Li b7117af560 TAB to SPACE 2019-12-26 10:14:14 -05:00
Heng Li b787ebe195 TAB to SPACEs 2019-12-26 10:11:44 -05:00
Heng Li e6cdac9ea9 fixed a few harmless warnings 2019-12-26 10:06:58 -05:00
Heng Li 7fb4646beb added gitignore 2019-12-26 09:41:15 -05:00
Heng Li 03c8899a34 fixed clang warnings 2019-12-26 09:40:35 -05:00
Haoyu Cheng 907458fad2 remove extra file 2019-12-26 02:27:43 -05:00
Haoyu Cheng 4ac9907e49 clean code 2019-12-26 02:26:24 -05:00
Haoyu Cheng 7f9c73507d same haplotype chimeric reads detection 2019-12-24 14:43:12 -05:00
Haoyu Cheng 29fe35eb21 remove debug information 2019-12-24 10:37:40 -05:00
Haoyu Cheng ea51239441 new chimeric detection 2019-12-24 05:03:59 -05:00
Haoyu Cheng 1ead2d3081 M50 improved 2019-12-23 09:37:26 -05:00
Haoyu Cheng 06556e4a9b backup without bundaries processing 2019-12-17 16:58:20 -05:00
Haoyu Cheng 90195293f1 for backup 2019-12-12 20:12:52 -05:00
Haoyu Cheng 9c25075fed update for base-level alignment 2019-12-12 03:06:47 -05:00
Haoyu Cheng f1cde019a9 for break points at chr11 2019-12-12 00:31:24 -05:00
Haoyu Cheng 09603432e5 fix bugs for overlaps of different length 2019-12-09 17:07:11 -05:00
Haoyu Cheng fca9c8db15 fix cross-chr bugs 2019-11-30 16:01:37 -05:00
Haoyu Cheng f95691db3a generate contig 2019-11-27 15:07:33 -05:00
Haoyu Cheng cb26e0ecd4 unclean graph 2019-11-22 21:58:56 -05:00
chhylp123 2a8e0dc254 Merge pull request #1 from lh3/new-mak 
New makefile; fixed a compiling error
 2019-11-22 15:13:20 -05:00
Heng Li db7e31f90d Merge branch 'master' into new-mak 2019-11-22 15:01:28 -05:00
Haoyu Cheng c7419d3e5e ortholog-based cutting 2019-11-22 14:59:28 -05:00
Heng Li cb3eecc5e0 added klib_unused to suppress kseq warnings 2019-11-22 14:47:54 -05:00
Heng Li 8ad76667f4 new Makefile 2019-11-22 14:43:37 -05:00
Heng Li b81b7f9213 Fixed a compiling error caused by UINT32_MAX 2019-11-22 14:36:37 -05:00
Haoyu Cheng 3425bd020b more cutting methods 2019-11-20 15:43:44 -05:00
Haoyu Cheng e8ff0c1dbc backup 2019-11-19 01:32:39 -05:00
Haoyu Cheng ada03ea388 final DP-based assembly 2019-11-13 20:18:11 -05:00
Haoyu Cheng d6c6a1fa11 DP 2019-09-07 21:25:11 -04:00
Haoyu Cheng b57923d050 2019_9_5 2019-09-05 11:47:54 -04:00
Haoyu Cheng d5327fe9ee phasing 2019-09-02 10:30:14 -04:00