22 Commits

Author	SHA1	Message	Date
Heng Li	f37c4e29fa	a bit refactoring for the next change	2020-10-29 18:24:47 -04:00
Heng Li	ef8c047559	removed unused ha_sketch	2020-10-29 11:28:43 -04:00
chhylp123	89fcb35a64	for debugging	2020-10-11 14:32:33 -04:00
chhylp123	724990cbe7	freeze-r304	2020-08-23 23:34:36 -04:00
chhylp123	03cf0d475c	save bfore multiple overlaps	2020-08-23 08:46:33 -04:00
chhylp123	ace34ae2b8	for high-het and coverage	2020-07-28 13:07:35 -04:00
Heng Li	f6ea45b58a	r251: always keep the best hits	2020-05-08 00:40:53 -04:00
Heng Li	e544360043	r250: fixed a bug in selecting top chains	2020-05-07 14:49:49 -04:00
Heng Li	331e437c72	r248: contained reads not handled properly	2020-05-03 00:27:53 -04:00
Heng Li	22b681b830	r228: resolved a compiler warning	2020-04-12 09:56:50 -04:00
Heng Li	4d7600361c	r226b: prefer unique anchors	2020-04-11 22:28:21 -04:00
Heng Li	c41aae0630	r211: added --write-paf/--write-ec/--skip-triobin	2020-04-08 22:32:54 -04:00
Heng Li	f0c53e9948	r192: estimate buffer memory	2020-04-05 11:17:12 -04:00
Heng Li	968b4caef9	r181: limit the max number of chains	2020-04-02 21:55:00 -04:00
Heng Li	3838482851	moved sorting to anchor.cpp for future changes	2020-04-02 19:18:29 -04:00
Heng Li	b7e5d1c4d3	r176: enabled the minimap2 chaining heuristic	2020-04-01 22:06:14 -04:00
Heng Li	7079a9f306	working on mid-sized test example	2020-03-27 16:55:28 -04:00
Heng Li	bd89bd500c	add disabled debugging code	2020-03-27 14:03:36 -04:00
Heng Li	30a70bc307	fixed wrong coordinate	2020-03-27 13:45:09 -04:00
Heng Li	1bb174a04e	fixed missing read names ... Overlapping not working yet (now confirmed)	2020-03-27 12:51:08 -04:00
Heng Li	78e8f2f28a	finish ha_get_new_candidates()	2020-03-27 11:46:53 -04:00
Heng Li	293f4b6b58	to replace get_new_candidates(); UNFINISHED!	2020-03-27 11:21:08 -04:00