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Author	SHA1	Message	Date
chhylp123	5bddae4ae9	Merge pull request #446 from chhylp123/hifiasm_dev_debug ... fixed missing/false duplication for diploid asm 0.19.5	2023-04-17 19:58:31 -04:00
chhylp123	18b649aadb	fixed missing/false duplication for diploid asm	2023-04-17 19:58:00 -04:00
chhylp123	fbfcf72eb3	Merge pull request #445 from chhylp123/hifiasm_dev_debug ... Hifiasm dev debug	2023-04-14 16:44:10 -04:00
chhylp123	0efcc14499	fix chain spliting bug	2023-04-14 16:43:41 -04:00
chhylp123	84e642d20d	fix bubble on-the-fly	2023-04-13 10:16:14 -04:00
chhylp123	b49b4a6cc7	Merge pull request #438 from chhylp123/hifiasm_dev_debug ... Hifiasm dev debug 0.19.4	2023-04-06 23:18:26 -04:00
chhylp123	7e855ba5e2	update README	2023-04-06 23:16:59 -04:00
chhylp123	5df5892f33	update for rescuing missing contigs	2023-04-06 23:14:41 -04:00
chhylp123	00959dfdd9	Merge pull request #430 from chhylp123/hifiasm_dev_debug ... 0.19.2->0.19.3 0.19.3	2023-03-22 12:26:41 -04:00
chhylp123	503cd0f7cc	0.19.2->0.19.3	2023-03-22 12:25:39 -04:00
chhylp123	00ad7458c3	Merge pull request #429 from chhylp123/hifiasm_dev_debug ... avoid misassemblies; better polyploidy graph	2023-03-22 12:24:31 -04:00
chhylp123	86b7dd424a	avoid misassemblies; better polyploidy graph	2023-03-22 12:23:53 -04:00
chhylp123	b763e1ff76	Merge pull request #422 from chhylp123/hifiasm_dev_debug ... disable postjoin for the ul assembly 0.19.2	2023-03-13 15:44:45 -04:00
chhylp123	d4773a497f	disable postjoin for the ul assembly	2023-03-13 15:43:22 -04:00
chhylp123	7bb366688e	Merge pull request #421 from chhylp123/hifiasm_dev_debug ... Hifiasm dev debug 0.19.1	2023-03-13 11:14:38 -04:00
chhylp123	f67faa9c34	path-max and path-min to avoid misassemblies	2023-03-13 11:13:57 -04:00
chhylp123	3407c7029e	coverage adjustment for polyploidy	2023-03-12 17:02:29 -04:00
chhylp123	f69166ee3b	Merge pull request #420 from chhylp123/hifiasm_dev_debug ... Hifiasm dev debug	2023-03-10 23:44:34 -05:00
chhylp123	2218bac8aa	clean output	2023-03-10 23:42:29 -05:00
chhylp123	b533067835	enable dbg-ovec	2023-03-10 23:30:24 -05:00
chhylp123	fa663a9680	Merge pull request #419 from chhylp123/hifiasm_dev_debug ... Hifiasm dev debug 0.19.0	2023-03-10 19:34:50 -05:00
chhylp123	384b721d84	clean output	2023-03-10 15:46:23 -05:00
chhylp123	8b79a3f22e	disable function for tangles with low-coverage ul	2023-03-10 15:34:10 -05:00
chhylp123	af4be8ca1a	disable integer correction; disable contain dedup	2023-03-10 09:12:07 -05:00
chhylp123	85c643e85d	clean contained read; fixed for deep_graph_clean	2023-03-07 15:28:24 -05:00
chhylp123	8a00c6c5f4	Merge pull request #414 from chhylp123/hifiasm_dev_debug ... better resolution for complex regions	2023-02-27 09:36:46 -05:00
chhylp123	a0f2f70d91	better resolution for complex regions	2023-02-27 09:35:50 -05:00
chhylp123	ad4ff5550b	Merge pull request #411 from chhylp123/hifiasm_dev_debug ... bug fixed for mask calculation 0.18.9	2023-02-24 00:37:36 -05:00
chhylp123	04f660fd8c	bug fixed for mask calculation	2023-02-24 00:36:52 -05:00
chhylp123	dd5f368fe6	Merge pull request #409 from chhylp123/hifiasm_dev_debug ... Hifiasm dev debug 0.18.8	2023-02-21 20:23:31 -05:00
chhylp123	2b4b4f29e0	r525	2023-02-21 20:22:56 -05:00
chhylp123	8ea2d5a622	r523-phasing-across chains	2023-02-21 15:44:45 -05:00
chhylp123	27f77dca29	Merge pull request #401 from chhylp123/hifiasm_dev_debug ... 0.18.6 -> 0.18.7	2023-02-20 23:42:20 -05:00
chhylp123	7d5c793109	additional cluster for phasing	2023-02-20 23:38:27 -05:00
chhylp123	3abd3793fb	clean graph alignment	2023-02-20 14:50:55 -05:00
chhylp123	b55e4396d2	prt_dbg_gfa -> before transitive reduction	2023-02-17 11:00:15 -05:00
chhylp123	fc598d71f6	0.18.6 -> 0.18.7	2023-02-16 12:16:24 -05:00
chhylp123	026cf97d61	Merge pull request #400 from chhylp123/hifiasm_dev_debug ... Hifiasm dev debug 0.18.7	2023-02-16 00:09:39 -05:00
chhylp123	286b897881	r513	2023-02-16 00:04:06 -05:00
chhylp123	f2da12a2ad	508 —> futhur graph cleaning	2023-02-12 22:49:12 -05:00
chhylp123	1166b92eb4	r502->additional alignment	2023-01-25 09:39:41 -05:00
chhylp123	1dd82e7729	Merge pull request #387 from chhylp123/hifiasm_dev_debug ... r500	2023-01-23 15:29:16 -05:00
chhylp123	78ef43ce8e	r500	2023-01-23 15:28:43 -05:00
chhylp123	6c91e8b0a7	Merge pull request #386 from chhylp123/hifiasm_dev_debug ... Hifiasm dev debug	2023-01-23 15:26:38 -05:00
chhylp123	dc07898f68	Merge branch 'hifiasm_dev_debug' of https://github.com/chhylp123/hifiasm into hifiasm_dev_debug	2023-01-23 15:25:37 -05:00
chhylp123	db2edc0ffb	fix exit(1) for bin_only	2023-01-23 15:25:01 -05:00
chhylp123	7280f132b1	Merge pull request #383 from chhylp123/hifiasm_dev_debug ... Merge pull request #348 from chhylp123/master 0.18.5	2023-01-17 10:28:29 -05:00
chhylp123	8ff5a1370d	Merge pull request #348 from chhylp123/master ... auto merge	2023-01-17 10:27:58 -05:00
chhylp123	f054b11e0e	Merge pull request #382 from chhylp123/hifiasm_dev_debug ... Hifiasm dev debug	2023-01-17 04:53:24 -05:00
chhylp123	25d6857d44	r499->false duplications	2023-01-17 04:49:56 -05:00