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275 Commits 11 Branches 54 Tags
v0.8
Commit Graph
16 Commits
Author SHA1 Message Date
Heng Li f6ea45b58a r251: always keep the best hits 2020-05-08 00:40:53 -04:00
Heng Li e544360043 r250: fixed a bug in selecting top chains 2020-05-07 14:49:49 -04:00
Heng Li 331e437c72 r248: contained reads not handled properly 2020-05-03 00:27:53 -04:00
Heng Li 22b681b830 r228: resolved a compiler warning 2020-04-12 09:56:50 -04:00
Heng Li 4d7600361c r226b: prefer unique anchors 2020-04-11 22:28:21 -04:00
Heng Li c41aae0630 r211: added --write-paf/--write-ec/--skip-triobin 2020-04-08 22:32:54 -04:00
Heng Li f0c53e9948 r192: estimate buffer memory 2020-04-05 11:17:12 -04:00
Heng Li 968b4caef9 r181: limit the max number of chains 2020-04-02 21:55:00 -04:00
Heng Li 3838482851 moved sorting to anchor.cpp for future changes 2020-04-02 19:18:29 -04:00
Heng Li b7e5d1c4d3 r176: enabled the minimap2 chaining heuristic 2020-04-01 22:06:14 -04:00
Heng Li 7079a9f306 working on mid-sized test example 2020-03-27 16:55:28 -04:00
Heng Li bd89bd500c add disabled debugging code 2020-03-27 14:03:36 -04:00
Heng Li 30a70bc307 fixed wrong coordinate 2020-03-27 13:45:09 -04:00
Heng Li 1bb174a04e fixed missing read names 
Overlapping not working yet (now confirmed)
 2020-03-27 12:51:08 -04:00
Heng Li 78e8f2f28a finish ha_get_new_candidates() 2020-03-27 11:46:53 -04:00
Heng Li 293f4b6b58 to replace get_new_candidates(); UNFINISHED! 2020-03-27 11:21:08 -04:00