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updated-visium-beta
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Author SHA1 Message Date
Timmy Huang afb4ba906b server update 2024-01-24 10:16:38 -08:00
Timmy Huang ede95bfe4b update requirements.txt 2024-01-23 10:56:56 -08:00
Timmy Huang 7d61f47a31 updated visium branch 2024-01-23 10:48:27 -08:00
Emanuele Bezzi 11690eb745 Add README-visium 2021-12-22 16:41:11 -05:00
Emanuele Bezzi eac84c5d74 Clean comments and logs 2021-12-21 11:33:38 -05:00
Emanuele Bezzi cbf3ba240a Put scaling back in the backend 2021-12-09 14:12:16 -05:00
Emanuele Bezzi 2fe9cc4aac Small fix 2021-12-08 17:20:06 -05:00
Emanuele Bezzi 8b07e57257 Connect button 2021-12-08 16:37:22 -05:00
Colin Megill f4c4ac5bda undable config and conditional graph render of image 2021-12-08 11:54:22 -08:00
Emanuele Bezzi febf582a0b Merge branch 'visium-beta' of github.com:chanzuckerberg/cellxgene into visium-beta 2021-12-07 19:42:53 -05:00
Emanuele Bezzi efe3bf7a72 Parametrization 2021-12-07 19:42:40 -05:00
Colin Megill b411fca5a3 auto switch spatial off 2021-12-07 16:32:55 -08:00
Colin Megill caa1526eb6 intent 2021-12-07 15:59:05 -08:00
Colin Megill 99c8f37a60 button, reducer state 2021-12-07 15:53:56 -08:00
Emanuele Bezzi b048bbfd0c Checkpoint 2021-12-06 14:57:10 -05:00
Emanuele Bezzi b1ff638879 Checkpoint 2021-12-05 12:58:21 -05:00
Emanuele Bezzi db0f50d011 Add frontend 2021-12-01 16:49:13 -05:00
Emanuele Bezzi 54d4de431c Add backend endpoint 2021-12-01 12:02:45 -05:00
Severiano Badajoz 853976b716 release version 1.0.0 (#2466) 
* Bump version: 0.19.0 → 1.0.0-rc.0

* Bump version: 1.0.0-rc.0 → 1.0.0
1.0.0 		2021-11-02 14:53:26 -07:00
Emanuele Bezzi a344f292a9 Restore logo and favicon in docs/ (#2464) 2021-10-14 21:13:04 +00:00
Emanuele Bezzi 15d2ce62b8 Migrate to the new documentation website (#2456) 2021-10-14 20:54:54 +00:00
Colin Megill 8e011314e9 Remove log (#2463) 2021-10-14 18:02:54 +00:00
Ben MR c81731d32c [FE: fix #2371] fix for when labels are null (#2462) 
Categoricals can have nulls
 2021-10-05 12:17:34 -07:00
Colin Megill 3b091d888d Update diffexpButtons.js (#2461) 2021-10-04 15:35:55 -07:00
Timmy Huang 79aeedc6c3 refactor: 2235 remove cookie banner (#2459) 2021-10-04 11:26:01 -07:00
Colin Megill e6bacf043b typo fix (#2460) 2021-10-01 18:28:47 -07:00
Colin Megill be020deaa6 Update infoMenu.js (#2455) 
Fixes #2452
 2021-09-29 13:00:55 -07:00
Emanuele Bezzi 4034256d9c Create CNAME file to point docs to the new website (#2453) 
Add a CNAME file that will redirect the current github pages (hosted at https://chanzuckerberg.github.io/cellxgene/) to the new website.
 2021-09-29 13:28:49 -04:00
Ben MR 5163e35e1f fix #2446 update release docs and commands (#2448) 
* update release docs and commands

* update doc on release-test install
 2021-09-29 15:06:35 +00:00
Ben MR f4986c9c7d Release version 0.19.0 (#2444) 
* Bump version: 0.18.0 → 0.19.0-rc.0

* release can 0.19.0

* Bump version: 0.19.0-rc.0 → 0.19.0-rc.1

* bump rc

* Bump version: 0.19.0-rc.1 → 0.19.0

* release final
0.19.0 		2021-09-28 11:10:24 -07:00
Colin Megill a0011b0872 cursor pointer on mit license and version (#2447) 2021-09-27 09:47:34 -07:00
Colin Megill 77fff0bd9c Remove pointer on gene (#2445) 
* Remove grab

Fixes #2438

* snapshot

* pointer

* snapshot
 2021-09-24 12:21:32 -07:00
Ben MR 6a4884d97c Re-add bumpversion to makefile (#2443) 2021-09-23 22:08:00 +00:00
Colin Megill 15714e9924 Remove grab (#2439) 
* Remove grab

Fixes #2438

* snapshot
 2021-09-23 10:30:55 -07:00
Severiano Badajoz 5eb0ecc997 chore: update frontend packages (#2442) 
* run audit

* migrate husky
 2021-09-22 10:22:44 -07:00
Andrew Tolopko e2772d1da9 #2410 reenable scheduled compatibility test (#2440) 
re-enable scheduled compat matrix tests on main branch; was temporarily commented out for testing on branch
 2021-09-21 17:27:45 -04:00
Colin Megill 7f068cd576 Reverse gene list order (#2432) 
Fixes #2420
 2021-09-21 11:53:50 -07:00
jacobrheath e4961a579e feat: removing sastisfaction gh action for gh app (#2441) 2021-09-21 10:09:30 -07:00
Andrew Tolopko c0263f6ce5 #2410 update compatibility test matrix (#2431) 
Github Actions Workflow updates compatibility matrix:
- Added MacOS Catalina and Big Sur to test compat matrix
- Added Python 3.9 to test compat matrix, but avoid running 3.9 for matrix jobs that do not have `tables` pypi build available for the given env
- Maintains running tests on both cellxgene main branch and latest pypi release.
- Add explicit matrix exclusions for matrix combinations that will never pass (see comments).
- Numerous refactorings to the workflow config to simplify matrix. Basically a rewrite.
- The anndata pkg is now tested at a pinned release and at latest release, but no longer using `master` branch version. To limit cross-product explosion of matrix jobs, the pinned anndata version is only tested on py3.8 and cellxgene latest release.
- Run unit and smoke tests in a single job, to improve speed, reduce workflow complexity and the number of jobs. Also fixes the redundant testing of unit tests. Within each job, the unit and smoke tests are run in separate steps for ease of troubleshooting. 
- Fixed termination of backend server to allow both smoke tests to run within a single job (both attempt to use 5005 port, sequentially, but first server was not being terminated).
- Replaced `continue-on-error: true` with `fail-fast: false`, which allows all matrix jobs to run independently, while also ensuring the that entire workflow is flagged as failed if any matrix job fails
-  The `smoke-test-annotations` fail intermittently and have been disabled. Fix will be addressed in story: https://app.zenhub.com/workspaces/single-cell-5e2a191dad828d52cc78b028/issues/chanzuckerberg/cellxgene/2433
 2021-09-21 08:32:19 -04:00
Madison Dunitz 3ebbb0ccbf move common code into server, update tests and makefile (#2425) 
* move common code into server, update tests and makefile

remove backend directory, refactor

update smoke tests
 2021-09-20 18:50:06 -07:00
Ben MR 97caa5bcaa Upgrade min versions of dependencies [zh2426] (#2436) 
* Update dependencies

Flask to 2.0
Scipy etc. bumped to latest version not supporting 3.5
Others bumped to latest where possible

* py min v

* relax py version

* revert reqs changes
 2021-09-20 17:30:30 -07:00
Severiano Badajoz f49c3d8fe7 feat: remove info drawer and reintroduce singleton categories (#2421) 
* refactor: drop non-session auth from frontend

* remove dataset drawer and reintroduce singleton values
 2021-09-20 16:58:55 +00:00
Ben MR ef2ab07ca0 Clean up dead/hosted code [zh2310] (#2430) 
* Clean up dead/hosted code

* Remove schema conversion tool and related
* Remove cxg references
* Remove locust

* missed a spot

* Remove aws secret manager

* Merge branch 'main' into brodgers/2310/code-cleanup-v1

* cleanup merge
 2021-09-17 20:41:12 +00:00
Ben MR 69e159916e [zh2311] Remove auth (#2427) 
* remove auth

* Remove all auth code

zh2311

* lint

* remove auth from e2e tests conf
 2021-09-17 18:47:52 +00:00
Severiano Badajoz a239d8636d fix: more accurate validation on geneset name (#2429) 2021-09-15 16:40:34 -07:00
Severiano Badajoz 0634160c0c Fix unit tests (#2428) 
* only create toaster if we're on the browser

* drop/fix references to window

* add back fe unit tests
 2021-09-15 00:43:59 +00:00
Severiano Badajoz 01013bcf04 refactor: drop non-session auth from frontend (#2419) 2021-09-14 15:55:46 -07:00
Madison Dunitz f9c744327a Dunitz/2308-remove hosted (#2399) 
* remove code for and references to czi-hosted

* revert client change
 2021-09-02 13:18:35 -04:00
Severiano Badajoz 780852fd49 docs: release 0.18.0 (#2413) 
* Bump version: 0.17.0 → 0.18.0-rc.0

* Bump version: 0.18.0-rc.0 → 0.18.0
0.18.0 		2021-08-31 15:52:30 -07:00
Colin Megill de03129061 Spinner on color by geneset when closed (#2412) 
* take 2

* take 2.1

* bruce test

* remove component did mount

* working
 2021-08-27 12:15:47 -07:00