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Author SHA1 Message Date
Colin Megill 020e562f5c merge typescript changes 2021-08-04 14:42:31 -07:00
Timmy Huang 95ce39f2e9 chore: Add global type file (#2363) 2021-08-03 21:52:10 +00:00
Bruce Martin 03bb904f24 remove unused packages from client (#2359) 
* remove unused packages from client

* add missing peer dep
 2021-07-30 20:00:00 -07:00
Colin Megill 01d34580b9 genesets e2e tests, undo/redo (#2327) 
* undo redo create

* edit undo redo

* all tests pass, add, edit

* description

* remove RER1

* remove rer1

* remove from hosted
 2021-07-30 16:52:49 -07:00
Timmy Huangandbkmartinjr 5ab96ed360 disable formatting rules for eslint and add prettier in lint-staged (#2355) 
* disable formatting rules for eslint and add prettier in lint-staged

* update npm modules

* set plugin-proposal-private-methods to loose

* update snapshots due to popover package update

* add missing quotes

Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
 2021-07-30 12:27:47 -07:00
Colin Megill 60d89b9478 flip scale 2021-07-30 10:59:42 -07:00
Bruce Martin 97fb98b4eb API update for tests (#2354) 2021-07-29 20:27:29 -07:00
Bruce Martin 0e7daea737 temp fixes for TS lint (#2352) 2021-07-29 18:31:38 -07:00
Bruce Martin 8136387127 Clean up max-category front-end limit (#2347) 
* remove topN category truncation from component rendering layer

* clean up category item limit implementation

* name change for clarity

* fix snapshot

* comments
 2021-07-29 16:05:10 -07:00
Mim HastieandTimmy Huang 27575b8d86 Added @typescript-eslint/recommended config with suppressions (#2345) 
* Disabled @blueprintjs/classes-constants. #2288.

* thuang-eslint-bp-off (#2344)

* Disabled @blueprintjs/classes-constants on webpack dev and shared. #2288.

* Added TS recommended, suppress lint errors codemod.

* Added per-error/warning ignore for tests.

* Added per-error/warning ignore for configuration.

* Added per-error/warning ignore for src. Removed suppress package.

* Minor linting.

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
 2021-07-28 16:06:34 -07:00
Bruce Martin 32f60a1547 clean up type inferencing (#2332) 
* unit tests for 64 bit conversion

* clean up type handling

* type inference tests

* more type inference fixes

* use schema to determine user intent for data typing

* stop using deprecated API

* fbs type encoding test

* add missing test

* add more tests

* correctly infer X type for CXG adaptor

* lint

* fix typo

* ts migration

* cleanup from PR review

* lint

* PR review changes
 2021-07-28 15:10:12 -07:00
Bruce Martin 1140676106 Correctly handle non-finite numbers in heuristic determination of X distribution (#2342) 
* handle non-finites explicitly

* improve and test edge case handling for distribution estimation

* revert debugging changes

* code readability
 2021-07-28 14:34:29 -07:00
Bruce Martin 0b1ab02a60 rename X_approx_distribution to X_approximate_distribution (#2337) 2021-07-27 13:43:04 -07:00
Severiano BadajozmaniarathiMadison Dunitz
 		1998c0ad63 fix: don't run lint with --fix on push tests (#2273) 
* fix: don't run lint with `--fix` on push tests

* npx

Co-authored-by: maniarathi <mani.arathi@gmail.com>
Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com>
 2021-07-27 16:43:01 +00:00
Bruce Martin 2b072e6271 update deps to match desktop (#2340) 2021-07-27 08:29:00 -07:00
Bruce Martin a1c46170b9 update compat workflow to match latest deps (#2335) 
* update compat workflow to match latest deps

* attempt to debug

* attempt to debug

* remove debugging code

* typo
 2021-07-26 14:32:46 -07:00
Colin Megill c2b12abe2b toggle and scale dotplot 2021-07-26 13:23:21 -07:00
Mim Hastiets-migrateTimmy Huang
 		934cc5c69b TS migration. #2288. (#2328) 
* Added TS. Updated build and linting config. Added types.

* [ts-migrate][.] Rename files from JS/JSX to TS/TSX

Co-authored-by: ts-migrate <>

* [ts-migrate][.] Run TS Migrate

Co-authored-by: ts-migrate <>

* Corrected files mangled by ts-migrate.

* Updated lint config, minor linting.

* Re-enabled Husky.

* Updated tests and config.

* Reverted webpack devtool config.

* Removed obsolete snapshots.

* Added annotations snap.

* Updated tsconfig includes wrt linting.

* Removed ts-migrate.

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
 2021-07-26 20:18:17 +00:00
jacobrheath 7328cbdbd5 feat[sastisfaction]: adding non-blocking security linting to cellxgene (#2210) 
* adding sastisfaction

* Update sastisfaction.yml

* Update sastisfaction.yml
 2021-07-26 12:24:43 -07:00
Colin Megill 2462d4afb1 color scale, button 2021-07-23 13:29:27 -07:00
Colin Megill 02e79d502f add classnames to canvases 2021-07-23 13:29:27 -07:00
Colin Megill 9c2323b7bc queries 2021-07-23 13:29:27 -07:00
Colin Megill e7200ce6c3 todo comment 2021-07-23 13:29:27 -07:00
Colin Megill b7ffb2748d colorby type 2021-07-23 13:29:27 -07:00
Colin Megill 7ab8a8894d no overlap 2021-07-23 13:29:27 -07:00
Colin Megill 7b01e9e67b remove hardcoded geneset 2021-07-23 13:29:27 -07:00
Colin Megill 72ee670620 remove logs 2021-07-23 13:29:27 -07:00
Colin Megill e21cac65bf set row and column 2021-07-23 13:29:27 -07:00
Colin Megill bb5bbaac8a reducer 2021-07-23 13:29:27 -07:00
Colin Megill e29a6f72c2 d3 scale for dot size 2021-07-23 13:29:10 -07:00
Colin Megill ed97013277 dotplot button 2021-07-23 13:29:10 -07:00
Colin Megill 2b29a152b9 metadata as var, maxsize todo 2021-07-23 13:28:17 -07:00
Colin Megill f0e9b1ab91 dotplot proto full 2021-07-23 13:28:17 -07:00
Colin Megill c489221296 geneset iterate 2021-07-23 13:28:17 -07:00
Colin Megill 0a69af98c5 break out load and err 2021-07-23 13:28:17 -07:00
Colin Megill 11570273e0 dotplot 1 2021-07-23 13:28:17 -07:00
Colin Megill 5f9d0a6b34 logging out values 2021-07-23 13:28:17 -07:00
Bruce Martin 1ea2b7fe80 fix for incorrect stats computation in diff exp t-test (#2318) 
* 2211 fixes

* lint

* lint

* add missing test and bug found by test

* change terminology for count distribution

* update scanpy requirement

* update scanpy requirement
 2021-07-23 11:36:26 -07:00
Severiano Badajoz 1ebde2213d fix: set count to 15 for testing (#2324) 2021-07-21 22:56:22 +00:00
Severiano Badajoz bbf1950624 fix: decrease the topN count explicitly on hosted (#2320) 
* fix: decrease the topN count explicitly on hosted

* lint
 2021-07-21 18:12:10 +00:00
Bruce Martin 3d7490e0a9 gene expression perf work (#2305) 
* gene expression perf work

* lint
 2021-07-16 12:56:42 -07:00
Bruce Martin 0667ad0274 remove experimental reembedding support (#2301) 
* remove experimental reembedding support

* lint

* lint

* add prepare requirements to requirements-dev

* oops, revert accidental deletion of import

* more test modifications

* remove obsolete unit tests
 2021-07-15 13:55:26 -07:00
Bruce Martin e334fbe96e remove experimental ontology support (#2300) 
* remove experimental ontology support

* lint

* remove ontologies from unit tests

* additional test changes
 2021-07-14 07:23:38 -07:00
maniarathi 45a8984223 Update license to be 2021. (#2285) 2021-07-12 10:00:17 -07:00
Severiano Badajoz 07816c2f93 docs: release 0.17.0 (#2278) 
* Bump version: 0.16.7 → 0.17.0-rc.0

* Bump version: 0.17.0-rc.0 → 0.17.0
0.17.0 		2021-07-07 15:07:37 -07:00
Severiano Badajoz 90da04b6c7 fix: update server version to 0.16.7 (#2276) 2021-07-06 23:25:34 +00:00
Severiano Badajoz 873b3a2f1f fix: point to local server (#2274) 2021-07-06 16:07:17 -07:00
Severiano Badajoz 5f976cc4fc fix: convert sparse numpy matrix to ndarray (#2271) 2021-07-06 21:04:50 +00:00
signechambers1 f55c726e2a Adding gene sets documentation to cellxgene docs (#2259) 
* Create gene_sets.md

* Add files via upload

* Update gene_sets.md

user guide updates

* Update gene_sets.md

Updates to multi-user

* Update gene_sets_example.csv

* Update gene_sets.md
 2021-07-06 10:30:54 -10:00
signechambers1andSeve Badajoz 56fcbae672 Remove safari from supported browsers (#2272) 
* Update README.md

* Update package.json

* Update obsoleteHTMLTemplate.html

* remove unneeded polyfills

* explicit deny safari

* remove from webpack and update lock

Co-authored-by: Seve Badajoz <sbadajoz@chanzuckerberg.com>
 2021-07-06 10:09:51 -10:00