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Author SHA1 Message Date
Charlotte Weaver 39414503bd Revert "Format loaded dataset" 2018-08-14 10:40:21 -07:00
Charlotte Weaver 451c930cb5 Merge pull request #186 from chanzuckerberg/csweaver/gitignore 
Cleanup .gitignore
 2018-08-14 09:52:43 -07:00
Charlotte Weaver 9d680cf8d8 Merge pull request #179 from chanzuckerberg/csweaver/api-v2-init 
Format loaded dataset
 2018-08-13 16:02:07 -07:00
Charlotte Weaver b884487789 Merge branch 'master' into csweaver/api-v2-init 2018-08-13 15:48:06 -07:00
Charlotte Weaver ddaa7016a5 Quote formatting 
' => "
 2018-08-13 15:00:23 -07:00
Charlotte Weaver a29ba8da4e Limit pytest ignore warning to only one specific warning 2018-08-13 15:00:06 -07:00
Charlotte Weaver 463cdef08b Cleanup .gitignore 
remove lines related to old separate repo version
add ignore for virtual environments and jupyter notebooks (I use them to test)
 2018-08-13 14:35:41 -07:00
Charlotte Weaver c8c098282d Merge pull request #185 from chanzuckerberg/csweaver/favicon 
Csweaver/favicon
 2018-08-13 10:56:39 -07:00
Charlotte Weaver 8c88f752ea Merge pull request #182 from chanzuckerberg/csweaver/static 
Set static folder to correct location
 2018-08-13 10:48:09 -07:00
Charlotte Weaver a4464d107f Add test to make sure static files are served 
this required that I break up the base url from the api route.
 2018-08-13 10:33:59 -07:00
Charlotte Weaver d44d267bda Initial tests for the rest v2 refactor 
testing the annotations and the data format validation
 2018-08-10 16:57:41 -07:00
Charlotte Weaver 55fa9b892a Splitting the format validation and mandatory annotations 2018-08-10 16:38:07 -07:00
Bruce Martin 5917dd1fb4 Merge pull request #181 from chanzuckerberg/csweaver/favicon 
Serving favicon correctly
 2018-08-10 08:28:49 -07:00
Charlotte Weaver 21a1f00a64 Set static folder to correct location 2018-08-09 14:25:11 -07:00
Charlotte Weaver e96653b826 Serving favicon correctly 2018-08-09 14:14:45 -07:00
Bruce Martin d01792f22b Merge pull request #178 from chanzuckerberg/bkmartinjr/crlf-cleanup 
clean up CRLF
 2018-08-09 11:31:18 -07:00
Charlotte Weaver 58000c1815 Format loaded dataset 
- create cell and gene ids
- recast numbers to float32/int32
 2018-08-09 11:23:43 -07:00
bkmartinjr 4417e8f3da clean up CRLF 2018-08-09 10:50:54 -07:00
Charlotte Weaver 3961bdc46d Merge pull request #166 from chanzuckerberg/csweaver/clean 
Added clean script for cellxgene
 2018-08-09 10:22:13 -07:00
Charlotte Weaver 004303300b -f flag for file removal too 2018-08-09 10:09:19 -07:00
Charlotte Weaver ba1e26138f Merge pull request #167 from chanzuckerberg/csweaver/build-anywhere 
Allow build-client to run anywhere
 2018-08-09 09:45:47 -07:00
Charlotte Weaver d093dc2e3b Allow build-client to run anywhere 2018-08-08 15:17:23 -07:00
Charlotte Weaver 3f0bb2ce1d Added clean script for cellxgene 2018-08-08 15:10:33 -07:00
Bruce Martin 585d51e9cf Merge pull request #164 from chanzuckerberg/bkmartinjr-crossfiltergroups 
add groups functionality to crossfilter
 2018-08-08 14:33:29 -07:00
Charlotte Weaver 246f4e41f0 Merge pull request #156 from chanzuckerberg/csweaver/infer-metadata 
Infer schema if none exists
 2018-08-08 11:56:13 -07:00
Charlotte Weaver 67504dcaff Merge pull request #142 from chanzuckerberg/csweaver/cli-subparsers 
Csweaver/cli subparsers
 2018-08-08 11:52:38 -07:00
Charlotte Weaver af85792cce Don't forget unsigned ints! 2018-08-08 11:20:01 -07:00
Charlotte Weaver f4780a9806 Moved add to parser out of try block. 2018-08-08 11:18:06 -07:00
bkmartinjr 8119962c28 revert the module change reversion 2018-08-08 10:45:48 -07:00
bkmartinjr b2add5f2ce Merge branch 'master' of https://github.com/chanzuckerberg/cellxgene into bkmartinjr-crossfiltergroups 2018-08-08 08:44:02 -07:00
Charlotte Weaver 2a11af2550 Formatting 2018-08-07 17:01:19 -07:00
Charlotte Weaver 2b698cc7d0 Merge remote-tracking branch 'origin/csweaver/cli-subparsers' into csweaver/cli-subparsers 2018-08-07 16:57:13 -07:00
Charlotte Weaver e5c7c0c44a Warn instead if print when scanpy isn't available 2018-08-07 16:57:07 -07:00
Charlotte Weaver 11f88a9eb2 Warn instead if print when scanpy isn't available 2018-08-07 16:49:40 -07:00
Charlotte Weaver bf19bb7dce Formatting 2018-08-07 16:38:25 -07:00
Charlotte Weaver c2b3f331cf Add layout and diffexp calculations to cli options 2018-08-07 16:37:47 -07:00
Charlotte Weaver 499b9551f1 moved scanpy parser to scanpy class 2018-08-07 16:37:02 -07:00
Charlotte Weaver 0969854e9e Merge pull request #162 from chanzuckerberg/csweaver/require 
Trimming out secondary dependencies from requirements
 2018-08-07 16:14:28 -07:00
Charlotte Weaver 247b89ab0c Update README.md 2018-08-07 15:54:25 -07:00
bkmartinjr 736ad2ca20 Merge branch 'master' of https://github.com/chanzuckerberg/cellxgene into bkmartinjr-crossfiltergroups 2018-08-07 15:46:43 -07:00
Bruce Martin 77f6e918b4 Merge pull request #163 from chanzuckerberg/csweaver/api-base 
api host 0.0.0.0 -> 127.0.0.1
 2018-08-07 15:46:13 -07:00
Charlotte Weaver ccee3e0a38 api host 0.0.0.0 -> 127.0.0.1 2018-08-07 15:43:13 -07:00
bkmartinjr 7ac8d31a96 Merge branch 'master' of https://github.com/chanzuckerberg/cellxgene into bkmartinjr-crossfiltergroups 2018-08-07 13:52:12 -07:00
Charlotte Weaver c11ae77de4 Trimming out secondary dependencies from requirements 2018-08-07 12:53:48 -07:00
Colin Megill c47f8d6ca5 Merge pull request #161 from chanzuckerberg/#152-security-warnings 
remove warnings in npm install, resolve security warnings
 2018-08-07 15:35:27 -04:00
Colin Megill 10cc801197 remove warnings in npm install, resolve security warnings 2018-08-07 15:00:28 -04:00
Charlotte Weaver 0db24a6c07 Merge pull request #157 from chanzuckerberg/csweaver/readme-data 
Added instructions on how to load your own data in scanpy
 2018-08-07 10:19:31 -07:00
Charlotte Weaver 9236f02637 Merge branch 'master' into csweaver/readme-data 2018-08-07 10:18:57 -07:00
bkmartinjr 957c1a9f20 Merge branch 'master' of https://github.com/chanzuckerberg/cellxgene into bkmartinjr-crossfiltergroups 2018-08-07 08:23:11 -07:00
Sidney Bell 12c52a55f7 Very minor changes to elaborate in a few places 2018-08-07 07:42:45 -07:00