* first cut at GET /genesets route
* update existing tests to match code changes
* more GET /genesets and initial tests
* add missing test fixture
* geneset validation accepts OTA format
* genesets route: better error handling, more tests
* lint
* genesets reducer and initial load
* fix lint
* add autosave support for genesets
* remove debug logging
* fix typo
* fix another typo
* update smoke test config for genesets
* smoke test fixes
* more fiddling with smoke tests
This splits the backend into two parts: the local backend for desktop cellxgene and the AWS backend for hosted cellxgene. The local backend is in local_server while the hosted remains in server. The general idea is to copy everything from server to local_server, pull unneeded stuff out of local_server, and keep server as-is for this PR. Not touching server means all the infra and deployment code will continue working just as it did before so we can make those changes incrementally.
The HistogramFooter needs to distinguish between an undefined
value and a value of 0. If the pvalAdj was 0, then the logFolChange
was previously not showing up.
#1888
Bumps [ini](https://github.com/isaacs/ini) from 1.3.5 to 1.3.7.
<details>
<summary>Commits</summary>
<ul>
<li><a href="c74c8af35f"><code>c74c8af</code></a> 1.3.7</li>
<li><a href="024b8b55ac"><code>024b8b5</code></a> update deps, add linting</li>
<li><a href="032fbaf5f0"><code>032fbaf</code></a> Use Object.create(null) to avoid default object property hazards</li>
<li><a href="2da90391ef"><code>2da9039</code></a> 1.3.6</li>
<li><a href="cfea636f53"><code>cfea636</code></a> better git push script, before publish instead of after</li>
<li><a href="56d2805e07"><code>56d2805</code></a> do not allow invalid hazardous string as section name</li>
<li>See full diff in <a href="https://github.com/isaacs/ini/compare/v1.3.5...v1.3.7">compare view</a></li>
</ul>
</details>
<details>
<summary>Maintainer changes</summary>
<p>This version was pushed to npm by <a href="https://www.npmjs.com/~isaacs">isaacs</a>, a new releaser for ini since your current version.</p>
</details>
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* Convert float annotations if possible.
The client converts all arrays to floats.
If a category contains integer labels, and that category is copied, it will contains floats (e.g 1.0 instead of 1).
When that category is put back to the server, it fails in the tiledb code, which does not accept floats.
The solution is to convert a float category to integer, if possible.
#1984
* updates
* add long title
* add organism to Dataset Metadata and create headers
* begin HTMLTable for metadata
* switch out truncating for scrolling
* add optional chaining to redux state mapping
Co-authored-by: maniarathi <mani.arathi@gmail.com>
* Revert "Remove Continuous vars with 1 value from histogram, add to info drawer (#1927)"
This reverts commit 242546371b.
* remove conditional rendering cases
* ignore pointer events
Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com>
* remove single val continous metadata from histogram, add to info drawer
* refactor to save singleContinuous values in state
* fix edge case, single continuous values reappeard in rsb when clipped
This PR adds a few helpful additions regarding authentication.
Changes:
* e2e tests are now run on test_oauth via a passed config.yaml
* node dev server correctly handles `/login` and `/logout` endpoints to make developing for auth easier
* Introduced auth e2e tests to check that buttons display and work
* remove auth buttons and dataset info from info menu
* add auth buttons to menubar
* remove auth from top left
* new auth buttons
* move infomenu to lsb dir
* styling fixes
* feedback
* more feedback
Co-authored-by: Timmy Huang <thuang@chanzuckerberg.com>
This PR does the following:
1. Add `login` and `logout` helper functions in `client/__tests__/e2e/cellxgeneActions.js`
2. Add conditional AuthN integration test in `client/__tests__/e2e/e2e.test.js`. The test will only run if env variable `TEST_AUTH_INTEGRATION` is `"true"`, which is only set in `single-cell-infra`'s Github Action flow. Corresponding PR [here](https://github.com/chanzuckerberg/single-cell-infra/pull/198)
* Remove door icon from log in button
* Move log in and info buttons from the top bar to in line with the cellxgene icon and dataset name
* Hover over on login button should say "Log in to cellxgene"
* Show email
closes#1830
