Colin Megill
7357493746
remove test imports
2021-03-08 13:29:12 -08:00
Colin Megill
21d1ca1bc8
Merge branch 'main' into colinmegill/geneset-prototype
2021-03-05 16:14:49 -08:00
Colin Megill
012ce53521
remove logging
2021-03-05 15:34:47 -08:00
Bruce Martin
c037f4eaa6
rename "geneset" to "gene set" in CLI ( #2088 )
...
* remove dead code
* rename geneset to gene_set
2021-03-02 15:36:01 -08:00
Bruce Martin
b00496198d
wire up geneset reducer ( #2082 )
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* first cut at GET /genesets route
* update existing tests to match code changes
* more GET /genesets and initial tests
* add missing test fixture
* geneset validation accepts OTA format
* genesets route: better error handling, more tests
* lint
* genesets reducer and initial load
* fix lint
* add autosave support for genesets
* remove debug logging
* fix typo
* fix another typo
* update smoke test config for genesets
* smoke test fixes
* more fiddling with smoke tests
2021-03-02 12:12:58 -08:00
Colin Megill
db957c5de3
gene set button text typo
2021-02-25 12:12:43 -08:00
Colin Megill
a01df1151d
truncate uses tooltip2
2021-02-25 12:11:38 -08:00
Colin Megill
2953687489
add popper2
...
upgrade react popper
upgrade react popper
adding popover2 package
2021-02-24 14:10:30 -08:00
Colin Megill
dd26addf6f
copy correction
2021-02-24 00:45:46 -08:00
Colin Megill
16a0e08250
fix language on create
2021-02-22 09:43:49 -08:00
Colin Megill
f5e13d0a71
edit geneset
2021-02-11 00:23:11 -08:00
Colin Megill
9170653296
handle empty string case on genes for create geneset
2021-02-10 16:35:20 -08:00
Colin Megill
4379427a40
Merge remote-tracking branch 'origin/colinmegill/geneset-prototype' into colinmegill/geneset-prototype
2021-02-10 11:27:25 -08:00
Colin Megill
ac475d72d9
chevron after
2021-02-10 11:26:50 -08:00
Colin Megill
e8f0a1d2cb
icons, language consistency
2021-02-10 11:22:36 -08:00
Bruce Martin
036b5f8c0f
Fix indexing bug in user-specified colors ( #2051 )
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* repaint category value when color changes
* bug fix incorrect indexing of user colors
* add test for bug 2007
* lint
2021-02-08 18:00:03 -08:00
bkmartinjr
d068e74f8f
add geneset: rename action
2021-02-08 16:17:35 -08:00
Bruce Martin
3aef21f76c
alpha blending fix in scatterplots ( #2033 )
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* explicitly specify alpha blending; rename NaN flag to accurately describe function
* fix incorret dest alpha blending function
2021-02-05 09:34:37 -08:00
Colin Megill
fec1736820
prepopulate geneset with genes from modal
2021-01-28 15:07:31 -08:00
Colin Megill
84fcbb8652
handle delete gene from set
2021-01-28 13:54:32 -08:00
Colin Megill
9760277642
prototype: remove csv upload placeholder
2021-01-28 10:34:20 -08:00
Colin Megill
7c0569b9b6
add geneset, add gene, delete set
2021-01-27 13:05:48 -08:00
bkmartinjr
e0a0b77c5b
add autosave
2021-01-22 14:07:34 -08:00
bkmartinjr
023976c992
client/src/actions/
2021-01-22 14:06:43 -08:00
Colin Megill
996393f260
Merge remote-tracking branch 'origin/colinmegill/geneset-prototype' into colinmegill/geneset-prototype
2021-01-22 12:09:26 -08:00
Colin Megill
c6ad970c41
add gene modals
2021-01-22 12:09:22 -08:00
bkmartinjr
0fd9579d00
fix typo
2021-01-22 10:32:54 -08:00
bkmartinjr
0001928317
wire e2e gene set loading prototype
2021-01-21 15:01:10 -08:00
bkmartinjr
7f1bb3e21e
add geneset UI reducer
2021-01-19 15:00:49 -08:00
bkmartinjr
91e15e9026
gene set reducer
2021-01-19 14:59:46 -08:00
Colin Megill
d1e117ebb9
Merge branch 'main' into colinmegill/geneset-prototype
2021-01-12 13:35:46 -08:00
bmccandless
c7eb319817
P value and Log fold change not showing up for all DE results ( #2016 )
...
The HistogramFooter needs to distinguish between an undefined
value and a value of 0. If the pvalAdj was 0, then the logFolChange
was previously not showing up.
#1888
2021-01-08 09:44:17 -08:00
Marcus Kinsella
46d02b1987
Handle schema v1.1.0 ( #2002 )
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Correctly display datasets that follow schema version 1.1.0
2020-12-14 15:20:29 -08:00
Colin Megill
8248fce412
Merge branch 'main' into colinmegill/geneset-prototype
2020-12-08 14:51:22 -08:00
Colin Megill
0a9a78bd85
merge main
2020-12-03 15:25:49 -08:00
Severiano Badajoz
0b91371ea8
check if viewport has changed and render accordingly ( #1996 )
2020-12-03 15:14:57 -08:00
bmccandless
2cc02a84cb
Convert float annotations if possible. ( #1987 )
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* Convert float annotations if possible.
The client converts all arrays to floats.
If a category contains integer labels, and that category is copied, it will contains floats (e.g 1.0 instead of 1).
When that category is put back to the server, it fails in the tiledb code, which does not accept floats.
The solution is to convert a float category to integer, if possible.
#1984
* updates
2020-11-20 17:01:53 -06:00
Timmy Huang
2cf55ab819
thuang-compress-annotation ( #1980 )
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* thuang-compress-annotation
* compress test
* use zlib.decompress directly
2020-11-17 14:05:07 -08:00
Colin Megill
36939d99fa
geneset show mean expression
2020-11-17 12:55:17 -08:00
Colin Megill
0ee62a86a0
render diffexp as geneset
2020-11-17 12:42:16 -08:00
Colin Megill
a9665df7e7
move create category to top
2020-11-17 12:13:02 -08:00
Colin Megill
f1d53d6dc4
don't clear diffexp on subset
2020-11-17 12:04:23 -08:00
Colin Megill
db4ac5e1e5
bump number of genes to 50
2020-11-17 11:23:13 -08:00
06b88cda20
do not update GPU buffers if data has not changed ( #1967 )
...
Co-authored-by: maniarathi <mani.arathi@gmail.com >
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com >
2020-11-09 10:41:39 -08:00
Bruce Martin
b5856ff9bc
fix accidental state error ( #1966 )
2020-11-04 18:46:04 -08:00
Severiano Badajoz
d87551ce5e
fix version check ( #1968 )
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Inverted the schema version check so that we check that it IS 1.0.0.
2020-11-04 17:43:41 -08:00
Severiano Badajoz and maniarathi
a5c9ae2432
Data drawer final round of prod QA fixes ( #1955 )
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* add long title
* add organism to Dataset Metadata and create headers
* begin HTMLTable for metadata
* switch out truncating for scrolling
* add optional chaining to redux state mapping
Co-authored-by: maniarathi <mani.arathi@gmail.com >
2020-11-04 09:43:43 -08:00
Severiano Badajoz and Madison Dunitz
727af83152
remove conditional rendering cases from color legend ( #1952 )
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* Revert "Remove Continuous vars with 1 value from histogram, add to info drawer (#1927 )"
This reverts commit 242546371bmadison.dunitz@chanzuckerberg.com >
2020-10-28 15:35:28 -07:00
Severiano Badajoz
924b518492
Revert "Remove Continuous vars with 1 value from histogram, add to info drawer ( #1927 )" ( #1953 )
...
This reverts commit 242546371b
2020-10-27 17:12:13 -07:00
maniarathi
9793398737
Add in missing previous crossfilter which was causing the re-embedding feature to fail. ( #1936 )
2020-10-21 09:16:13 -07:00
Colin Megill
