Sidney Bell
34e5a91dc6
Add calculate_qc_metrics to `prepare ( #697 )
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* Calculate QC metrics
* Add QC metrics to prepare section of readme
* Add pointer to scanpy qc metrics function
* Don't explicitly pass qc flag as arg
* Add explicit toggle for run-qc/skip-qc
* Move qc metrics calculation to separate step/function
2019-04-09 08:56:07 -07:00
Sidney Bell
c9a56fa73a
Update scanpy version ( #688 )
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Update to version 1.3.7
2019-04-04 12:16:30 -07:00
Sidney Bell
16f93397ae
Support diffmap and phate layouts. Explicitly handle embeddings with >2 components. ( #662 )
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* Add diffmap and phate to supported embeddings
* Explicitly pull the first two components of any given layout
2019-03-21 19:06:05 -07:00
Sidney Bell
b6f946ec8a
Add note about installing hdf5 to FAQ ( #581 )
2019-02-08 14:56:16 -08:00
Sidney Bell
77ca5c267e
Update readme ( #137 )
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* Update readme
* Add demo gif
* Update README.md
* Update README.md
* Update README.md
* Update README.md
* Update README.md
2018-08-03 10:23:57 -07:00
Sidney Bell