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Author SHA1 Message Date
Sidney Bell
a3d96aae0a Minor text edits to hosted (i.e., typos) 2019-11-21 17:02:01 -08:00
Sidney Bell
d5d56d89d1 Change text color 2019-11-21 17:01:33 -08:00
Sidney Bell
a6a2841961 Update gifs in gallery (thank you @liaprins-czi !) 2019-11-21 17:01:24 -08:00
Sidney Bell
7bf76fa557 Merge remote-tracking branch 'origin/master' into sidneymbell/docs-overhaul 2019-11-21 16:49:18 -08:00
Colin Megill
c2ededfc62 Anno editing label/category error states (#1048) 
* anno error states

* label validation should not treat empty string as error

* disable Submit if no label or category entered

* edit category name error states

* flex start

* pr cleanup

* label name validation fixes

* PR comment responses
 2019-11-21 19:08:29 -05:00
Bruce Martin
ee62dd355f [WIP] JS lint and dead code removal (#1053) 
* lint and dead code removal

* fix regressions
 2019-11-21 14:10:02 -08:00
bkmartinjr
0415c30f0b add security notice to readme 2019-11-20 10:42:27 -08:00
bkmartinjr
79e534e397 additional caveats/warnings for hosting 2019-11-20 10:40:00 -08:00
bkmartinjr
f4919340e9 merge 2019-11-20 10:33:17 -08:00
bkmartinjr
976f9d9ff8 add hosting notes 2019-11-20 10:28:40 -08:00
Bruce Martin
9a540a4f0a fix erroneous state clearing (#1052) 2019-11-19 11:11:19 -08:00
Severiano Badajoz
5968da18b4 fix inconsistent sidebar value height(#1039) 2019-11-18 12:43:16 -08:00
Severiano Badajoz
bd5f816d58 fix dataset title clipping (#1040) 2019-11-18 12:42:55 -08:00
Severiano Badajoz
cf8f1a710d add padding to scatterplot shift (#1043) 2019-11-18 12:41:58 -08:00
Bruce Martin
2d0b646956 js dependency update (#1045) 2019-11-18 11:22:13 -08:00
Bruce Martin
b284e6f820 Improve CLI help (#1025) 
* launch option changes

* more CLI help improvements

* change plot help

* additional changes requested

* change metavars for options and subcommand
 2019-11-14 13:02:40 -08:00
Bruce Martin
5ea9ac8a9e Add provenance header to labels CSV file (#1041) 
* add last mod time lookup to data locator

* store data locator in Driver

* save metadata header in labels csv

* lint

* fix tests

* change datetime format to second precision
 2019-11-14 12:33:48 -08:00
Colin Megill
89d748b007 state (#1032) 2019-11-13 15:13:15 -05:00
Severiano Badajoz
68ad4b1228 bump @blueprintjs dependencies (#1038) 2019-11-13 11:56:48 -08:00
Bruce Martin
a52e86a69b improve category and label name validation (#1034) 2019-11-13 09:40:37 -08:00
Severiano Badajoz
a5d343aaa4 add list of wild hosted cellxgene instances 2019-11-12 15:39:04 -08:00
Bruce Martin
04c83993d2 clear color-by mode when current category is deleted (#1033) 2019-11-12 15:31:06 -08:00
bkmartinjr
54d144bb75 add build dependencies for igraph and louvain 2019-11-12 07:56:03 -08:00
bkmartinjr
bf3bf58d6e improve launch docs 2019-11-09 13:03:47 -08:00
bkmartinjr
611c8b98b1 add --backed info to troubleshooting 2019-11-09 12:59:33 -08:00
bkmartinjr
d08506ae12 improve install docs 2019-11-09 12:49:22 -08:00
Bruce Martin
238b7420f7 update deprecated Pandas API (#1021) 
* update use of deprecated API

* update pandas depencency
 2019-11-08 09:49:52 -08:00
Colin Megill
cadf710bf8 remove duplicate handler (#1027) 2019-11-08 11:18:29 -05:00
Sidney Bell
9c8c28e1cb Overhaul the whole documentation site 2019-11-07 17:03:33 -08:00
Colin Megill
84900bad0e Warnings on anno textfields (#1023) 
*  Warning for creating new label with an existing name

* category dup

* italics
 2019-11-07 18:57:15 -05:00
Colin Megill
4c3d783fc8 Continuous data in right sidebar (#985) 
* Create right sidebar files, move histos over

* restructure continuous legend + all padding

* right sidebar file

* proper graph positioning and resize

* new lasso values since right sidebar

* fix autosave position
 2019-11-05 20:29:21 -05:00
Bruce Martin
461084eca1 Pin the 'unassigned' annotation value/label to bottom of list (#1018) 
* pin unassigned label to bottom of category list

* pin unassigned label to bottom of category list
 2019-11-05 09:22:39 -08:00
Bruce Martin
341d3015f0 fix typo (#1016) 2019-11-05 09:21:48 -08:00
Prete
6a95d956a9 Update Dockerfile (#1019) 
Added python-requests package to the Dockerfile so cellxgene can use URLs as a data source.
 2019-11-05 08:57:29 -08:00
Bruce Martin
7599af451f add context sensitivity to annotation "label" menu item (#1015) 
* cache common results to reduce jank

* add util function in support of annotation labelling

* enable/disable annotation edit menus per issue 972; improve formatting

* PR review requests
 2019-11-04 14:22:38 -08:00
Bruce Martin
823d819eee allow user to save an empty label dataframe (#1012) 2019-11-04 14:14:49 -08:00
Bruce Martin
a16c2e2747 crossfilter immutability error (#1009) 
* add rename immutability test

* make rename immutable
 2019-11-04 14:14:17 -08:00
Colin Megill
e50fd8b881 Animate list items on name change (#1008) 
* animate list items

* fix comment
 2019-11-04 14:09:16 -05:00
Charlotte Weaver
3e61bb807d e2e testing documentation (#1000) 2019-11-03 10:56:28 -08:00
dependabot[bot]
345e2c344b Bump lodash.template from 4.4.0 to 4.5.0 in /client (#1002) 
Bumps [lodash.template](https://github.com/lodash/lodash) from 4.4.0 to 4.5.0.
- [Release notes](https://github.com/lodash/lodash/releases)
- [Commits](https://github.com/lodash/lodash/compare/4.4.0...4.5.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2019-11-03 10:56:04 -08:00
Colin Megill
3f0567c59f disable editing if already editing (#999) 2019-10-31 13:46:59 -04:00
Colin Megill
934f61f2a1 categoryAddingNewLabel (#995) 2019-10-24 22:02:38 -04:00
Bruce Martin
60a23b681c QOL documentation: csweaver contributions from PR #912 (#977) 
* csweaver changes from PR #912

* fix formatting error
 2019-10-24 08:44:36 -07:00
Bruce Martin
e581dec8f5 release 0.12.0 (#981) 0.12.0 2019-10-08 12:34:21 -07:00
Bruce Martin
711f3b7048 Add support for anndata backed mode (#943) 
* initial cut at backed mode

* make flask multithreading conditional on debug flag

* update X access to support backed mode

* lint

* improve help message for backed mode

* fix tests

* add MatrixProxy to normalize supported matrix types

* add FAQ entry for --backed

* remove use of matrix.T

* clean up

* add ability to disable diffexp from CLI; add hueristic to detect likely slow diffexp calculation, and warn user

* fix tests

* do not print diffexp speed warning if diffexp is disabled

* tweak wording of diffexp speed messages

* add FAQ entry on --disable-diffexp

* revise heuristic for warning about slow diffexp

* use quick tooltip delay on diffexp button
 2019-10-08 11:16:07 -07:00
Colin Megill
1467357db5 re-label (#973) 2019-10-07 16:02:09 -04:00
Bruce Martin
de6721b682 fix broken link (#978) 2019-10-07 11:08:18 -07:00
Colin Megill
296352b620 remove modal for inline edit category name, and autofocus (#962) 
* remove modal for inline edit category name, and autofocus

* remove comment, rename to categorybeingedited
 2019-10-04 13:41:05 -04:00
Bruce Martin
3f2811d9da rendering performance improvements (#968) 
* freeze objects

* component rendering perf work

* use PureComponent where safe

* remove obsolete WorldUtil code

* make brushable histogram a pure component
 2019-10-04 07:59:22 -07:00
Bruce Martin
700c871e6d reduce dot scaling upon zoom (#963) 
* remove obsolete code

* change point scaling with zoom distance
 2019-10-04 07:58:38 -07:00