bmccandless
7599af252d
Update compatibility test ( #2009 )
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Add comment in requirements about h5py and anndata.
#1963
2020-12-21 14:38:07 -06:00
Madison Dunitz
3b6c46ba86
Fix dependency issues in compatibility tests ( #1951 )
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* update reqs
* pin scanpy
* merge in fix for race conditions
2020-10-30 10:47:12 -05:00
Madison Dunitz
946a910ef4
Fix compatibility test ( #1948 )
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* update anndata version and warning about version
* update compatibility tests
2020-10-26 17:23:55 -05:00
maniarathi
a63bf9d5a3
Change psycopg to be binary ( #1842 )
2020-09-16 14:46:59 -07:00
maniarathi
9fac6849a3
Fix import of anndata from master so that there aren't issues with scanpy version checking. ( #1834 )
2020-09-14 17:19:24 -07:00
Matt Weiden
152c07a28e
Change default branch from 'master' to 'main' ( #1589 )
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The default branch has been changed. This PR cleans up references to
`master` and fixes links that would otherwise be broken.
For more background see the following references:
* https://www.independent.co.uk/life-style/gadgets-and-tech/news/github-master-slave-slavery-whitelist-language-inclusive-a9568576.html
* https://tools.ietf.org/id/draft-knodel-terminology-00.html
2020-06-25 14:04:30 -07:00
Matt Weiden
a862f2b2a4
Further refine compatibility tests ( #1215 )
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* Make sure apt is up to date before pulling hdf5
* Only install py dev reqs in cxg release vs anndata master test
* Don't need bu flag when using sed on ubuntu
* Don't re-install package reqs in python x anndata ver tests
* Minor documentation fix
2020-03-11 14:16:05 -07:00
Matt Weiden
d8231a9a3b
Fixes to compatibility tests ( #1205 )
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* Unpin anndata ver in tests against anndata master
* Add branch config to work on push
* Add links to tests in GitHub Actions status badges
* Remove temporary branch name
2020-03-10 08:19:36 -07:00
Matt Weiden
ded35c7252
Spelling fix in Compatibility Test workflow ( #1178 )
2020-02-26 11:12:16 -08:00
Matt Weiden
c630be33df
Simplify CI checks on git push, add nightly checks on cron ( #1158 )
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* Switch push tests to Github Actions
* Add nightly tests
* Add anndata check
* Add test status badges
* Add anndata 0.6.22.post1 workaround
* Rename Nightly tests to Compatibility Tests
* Fix to anndata fix
* Turn on cron schedule
* Fix badge mardown in README.md
* Fix cron schedule
2020-02-18 11:57:19 -08:00
