Seve Badajoz
cf21538717
introduce TypedArray + NumericArray
2021-08-12 16:36:24 -07:00
Seve Badajoz
a6afd4ef11
type range
2021-08-12 16:35:27 -07:00
Seve Badajoz
bff996066d
type quantile
2021-08-12 16:35:27 -07:00
Seve Badajoz
ad6f67f9d2
type promise limit
2021-08-12 16:35:27 -07:00
Seve Badajoz
70c65897c8
type makeContinousDimensionName callsite
2021-08-12 16:35:27 -07:00
Seve Badajoz
8850c78af9
type nameCreators
2021-08-12 16:35:27 -07:00
Seve Badajoz
ba5ff61dbc
missed camera member var
2021-08-12 16:35:27 -07:00
Seve Badajoz
8de3bca232
type catchErrorsWrap callsite
2021-08-12 16:35:27 -07:00
Seve Badajoz
eb2edb35d0
type actionhelpers
2021-08-12 16:35:27 -07:00
Seve Badajoz
848b156828
type reducer store
2021-08-12 16:35:27 -07:00
Seve Badajoz
e49ad7a433
type camera
2021-08-12 16:35:27 -07:00
Severiano Badajoz
925b785b1f
fix: disable FE auth testing on compatibility tests ( #2377 )
2021-08-12 18:34:04 +00:00
Bruce Martin
660dff256c
add array type foundations ( #2376 )
2021-08-12 07:17:05 -07:00
Timmy Huang
59c475b821
chore: extract schema types ( #2375 )
...
* chore: extract schema types
* address comments
2021-08-12 03:12:21 +00:00
Timmy Huang
fc60b2acef
fix: thuang-fix-tsconfig-path ( #2372 )
...
Thanks so much for the quick review, Bruce!!
2021-08-11 01:38:33 +00:00
Timmy Huang
26de334274
chore: add schema types ( #2369 )
2021-08-04 13:16:18 -07:00
Timmy Huang
95ce39f2e9
chore: Add global type file ( #2363 )
2021-08-03 21:52:10 +00:00
Bruce Martin
03bb904f24
remove unused packages from client ( #2359 )
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* remove unused packages from client
* add missing peer dep
2021-07-30 20:00:00 -07:00
Colin Megill
01d34580b9
genesets e2e tests, undo/redo ( #2327 )
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* undo redo create
* edit undo redo
* all tests pass, add, edit
* description
* remove RER1
* remove rer1
* remove from hosted
2021-07-30 16:52:49 -07:00
Timmy Huang and bkmartinjr
5ab96ed360
disable formatting rules for eslint and add prettier in lint-staged ( #2355 )
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* disable formatting rules for eslint and add prettier in lint-staged
* update npm modules
* set plugin-proposal-private-methods to loose
* update snapshots due to popover package update
* add missing quotes
Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com >
2021-07-30 12:27:47 -07:00
Bruce Martin
97fb98b4eb
API update for tests ( #2354 )
2021-07-29 20:27:29 -07:00
Bruce Martin
0e7daea737
temp fixes for TS lint ( #2352 )
2021-07-29 18:31:38 -07:00
Bruce Martin
8136387127
Clean up max-category front-end limit ( #2347 )
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* remove topN category truncation from component rendering layer
* clean up category item limit implementation
* name change for clarity
* fix snapshot
* comments
2021-07-29 16:05:10 -07:00
Mim Hastie and Timmy Huang
27575b8d86
Added @typescript-eslint/recommended config with suppressions ( #2345 )
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* Disabled @blueprintjs/classes-constants. #2288 .
* thuang-eslint-bp-off (#2344 )
* Disabled @blueprintjs/classes-constants on webpack dev and shared. #2288 .
* Added TS recommended, suppress lint errors codemod.
* Added per-error/warning ignore for tests.
* Added per-error/warning ignore for configuration.
* Added per-error/warning ignore for src. Removed suppress package.
* Minor linting.
Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com >
2021-07-28 16:06:34 -07:00
Bruce Martin
32f60a1547
clean up type inferencing ( #2332 )
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* unit tests for 64 bit conversion
* clean up type handling
* type inference tests
* more type inference fixes
* use schema to determine user intent for data typing
* stop using deprecated API
* fbs type encoding test
* add missing test
* add more tests
* correctly infer X type for CXG adaptor
* lint
* fix typo
* ts migration
* cleanup from PR review
* lint
* PR review changes
2021-07-28 15:10:12 -07:00
Bruce Martin
1140676106
Correctly handle non-finite numbers in heuristic determination of X distribution ( #2342 )
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* handle non-finites explicitly
* improve and test edge case handling for distribution estimation
* revert debugging changes
* code readability
2021-07-28 14:34:29 -07:00
Bruce Martin
0b1ab02a60
rename X_approx_distribution to X_approximate_distribution ( #2337 )
2021-07-27 13:43:04 -07:00
1998c0ad63
fix: don't run lint with --fix on push tests ( #2273 )
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* fix: don't run lint with `--fix` on push tests
* npx
Co-authored-by: maniarathi <mani.arathi@gmail.com >
Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com >
2021-07-27 16:43:01 +00:00
Bruce Martin
2b072e6271
update deps to match desktop ( #2340 )
2021-07-27 08:29:00 -07:00
Bruce Martin
a1c46170b9
update compat workflow to match latest deps ( #2335 )
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* update compat workflow to match latest deps
* attempt to debug
* attempt to debug
* remove debugging code
* typo
2021-07-26 14:32:46 -07:00
934cc5c69b
TS migration. #2288 . ( #2328 )
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* Added TS. Updated build and linting config. Added types.
* [ts-migrate][.] Rename files from JS/JSX to TS/TSX
Co-authored-by: ts-migrate <>
* [ts-migrate][.] Run TS Migrate
Co-authored-by: ts-migrate <>
* Corrected files mangled by ts-migrate.
* Updated lint config, minor linting.
* Re-enabled Husky.
* Updated tests and config.
* Reverted webpack devtool config.
* Removed obsolete snapshots.
* Added annotations snap.
* Updated tsconfig includes wrt linting.
* Removed ts-migrate.
Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com >
2021-07-26 20:18:17 +00:00
jacobrheath
7328cbdbd5
feat[sastisfaction]: adding non-blocking security linting to cellxgene ( #2210 )
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* adding sastisfaction
* Update sastisfaction.yml
* Update sastisfaction.yml
2021-07-26 12:24:43 -07:00
Bruce Martin
1ea2b7fe80
fix for incorrect stats computation in diff exp t-test ( #2318 )
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* 2211 fixes
* lint
* lint
* add missing test and bug found by test
* change terminology for count distribution
* update scanpy requirement
* update scanpy requirement
2021-07-23 11:36:26 -07:00
Severiano Badajoz
1ebde2213d
fix: set count to 15 for testing ( #2324 )
2021-07-21 22:56:22 +00:00
Severiano Badajoz
bbf1950624
fix: decrease the topN count explicitly on hosted ( #2320 )
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* fix: decrease the topN count explicitly on hosted
* lint
2021-07-21 18:12:10 +00:00
Bruce Martin
3d7490e0a9
gene expression perf work ( #2305 )
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* gene expression perf work
* lint
2021-07-16 12:56:42 -07:00
Bruce Martin
0667ad0274
remove experimental reembedding support ( #2301 )
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* remove experimental reembedding support
* lint
* lint
* add prepare requirements to requirements-dev
* oops, revert accidental deletion of import
* more test modifications
* remove obsolete unit tests
2021-07-15 13:55:26 -07:00
Bruce Martin
e334fbe96e
remove experimental ontology support ( #2300 )
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* remove experimental ontology support
* lint
* remove ontologies from unit tests
* additional test changes
2021-07-14 07:23:38 -07:00
maniarathi
45a8984223
Update license to be 2021. ( #2285 )
2021-07-12 10:00:17 -07:00
Severiano Badajoz
07816c2f93
docs: release 0.17.0 ( #2278 )
...
* Bump version: 0.16.7 → 0.17.0-rc.0
* Bump version: 0.17.0-rc.0 → 0.17.0
2021-07-07 15:07:37 -07:00
Severiano Badajoz
90da04b6c7
fix: update server version to 0.16.7 ( #2276 )
2021-07-06 23:25:34 +00:00
Severiano Badajoz
873b3a2f1f
fix: point to local server ( #2274 )
2021-07-06 16:07:17 -07:00
Severiano Badajoz
5f976cc4fc
fix: convert sparse numpy matrix to ndarray ( #2271 )
2021-07-06 21:04:50 +00:00
signechambers1
f55c726e2a
Adding gene sets documentation to cellxgene docs ( #2259 )
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* Create gene_sets.md
* Add files via upload
* Update gene_sets.md
user guide updates
* Update gene_sets.md
Updates to multi-user
* Update gene_sets_example.csv
* Update gene_sets.md
2021-07-06 10:30:54 -10:00
signechambers1 and Seve Badajoz
56fcbae672
Remove safari from supported browsers ( #2272 )
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* Update README.md
* Update package.json
* Update obsoleteHTMLTemplate.html
* remove unneeded polyfills
* explicit deny safari
* remove from webpack and update lock
Co-authored-by: Seve Badajoz <sbadajoz@chanzuckerberg.com >
2021-07-06 10:09:51 -10:00
face1b3033
genesets e2e tests ( #2241 )
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* __test: create geneset
* example dataset test geneset
* delete geneset test
* edit __test
* gene crud
* Update client/Makefile
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com >
* copy gene sets separately
* make fix
* ignore test files locally
* csv update
* updated csvs
* fix unit tests for gene set load routes
* add missing fix to czi_hosted unit test
* pin tiledb version, for czi_hosted backend, to <0.9
* Revert tiledb pin to be less than 0.9. Broken tests have been updated in main branch.
* newline, gitignore
* color by and subset
* diffexp sets equal
* add diff exp test class
* fix data class
* diffexp snapshot
* snapshot
* snap3
* snapshot parentInnerhtml
* remove snap
* updated anno snaps
* add test class to gene list div
* new snapshots
* kick off
* Revert "kick off"
This reverts commit 743f551d55sbadajoz@chanzuckerberg.com >
Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com >
Co-authored-by: Arathi Mani <arathi.mani@chanzuckerberg.com >
Co-authored-by: maniarathi <mani.arathi@gmail.com >
2021-07-01 21:29:06 -04:00
Severiano Badajoz
b714c18e75
feat: frontend geneset validation ( #2258 )
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* add geneset name validation
* validate genes before addition
* display error messages
2021-07-01 22:09:50 +00:00
Severiano Badajoz
b8b1d0dd9e
fix: reset gene set colorScale on gene set deletion ( #2264 )
2021-06-30 16:46:44 -07:00
Madison Dunitz
5007d307a2
Dunitz/czi hosted test server ( #2254 )
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update hosted unit tests to use wsgi server instead of cellxgene packages
2021-06-30 15:07:54 -07:00
Severiano Badajoz
82de4178d9
feat: add quick gene lookup functionality ( #2250 )
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* add/remove gene functionality back with geneset style gene
* styling and expansion
* memo gene list to prevent re render
2021-06-23 13:59:10 -04:00
Seve Badajoz