Commit Graph

837 Commits

Author SHA1 Message Date
Charlotte Weaver
d5deb1579f [EASY] fix max-category-items (#813)
* fix max-category-items

* match default for max category items

fe had 1000, be had 100
2019-06-13 15:45:43 -07:00
Severiano Badajoz
334b8bb8da draw labels marking the centroids of category value clusters (#809)
* Connect mouse over events to reducer actions

* Change Styling on hover

* Rename reducer actions to be more descriptive

* Reorder reducer in cascade

* Create centroid calculation util

* Whitespace

* Typo fix, use correct action

* Create centroid calc util

* Create centroid svg setup

* Refactor existing svg layer to toolSVG

* Change calcCentroid signature and centroidXY to match mapPointToScreen

* Add id and styling

* Run prettier

* Set z-index to 999

* Draw the label

* Introduce the centroid SVG, refactor code to allow both SVG layers

* Add text label and compute radius based on population

* Implement optional chaining

* Update font family

* Optimize calcMeanCentroid()

* Create and utilize calcMedianCentroid()

* Remove mass circle from label

* Remove styling change on hover

* Remove reducer action logs

* Prettier

* Swap out binds for arrow functions

* Style text

* switch from selectAll() to select()

* Reflect centroid container's purpose in id

* Remove mass from the output

* Swap to obj

* Add finite check

* Don't draw centroid if no finite values

* Fix finite check

* Remove log

* Toggle label coloring based on colorBy state

* Pass cursor events through centroid svg
2019-06-13 15:40:57 -07:00
Colin Megill
6aeefb0fe6 menubar (#804)
* menubar 1

* zoom switching

* centering, pixel perfect canvas

* remove dead args and code

* clipping

* remove log

* if

* connect props

* lint

* undo

* logo left, componetize

* graph back to full height

* shadow to top

* do not prematurely call event handlers during render

* change test to deal with async histogram creation

* left section padding

* lint

* adjust graph to account for top bar,

* lasso tests

* refine histogram tests

* remove testing (onlys)
2019-06-13 15:15:43 -07:00
Charlotte Weaver
eac514e04d update favicon (#814) 2019-06-13 11:29:27 -07:00
Charlotte Weaver
afeddad343 windows fixes (#767) 2019-06-11 11:41:27 -07:00
Charlotte Weaver
0f17b84dc1 Add reload back in (#808) 2019-06-06 13:49:15 -07:00
Charlotte Weaver
3edb87d125 gui multiprocess - experimental feature (#780) 2019-06-06 10:52:05 -07:00
Justin Kiggins
9f9393a486 adds section on risks of hosted instances (#807)
Co-Authored-By: Charlotte Weaver <charlottesweaver@gmail.com>
2019-06-04 09:16:11 -07:00
Charlotte Weaver
1d6bb032a3 remove async from describe blocks (#805) 2019-06-03 14:59:16 -07:00
Justin Kiggins
3152de4b7f fixes URL to getting started (#801) 2019-05-31 19:34:51 -07:00
Bruce Martin
ca9a6796d8 release 0.10.1 (#797) 0.10.1 2019-05-30 13:44:42 -07:00
Bruce Martin
a6142bdf93 improve graph scale and centering (#796)
* add gutter to embedding canvas

* improve layout scale and translate

* fix lint

* pin tables to version 3.5.1

* fix lasso coordinate smoke tests
2019-05-30 13:31:41 -07:00
Justin Kiggins
ffd7f0db49 adds zenodo badge (#795) 2019-05-30 10:23:49 -07:00
Bruce Martin
c6252825f3 release 0.10.0 (#794) 0.10.0 2019-05-29 16:55:43 -07:00
Bruce Martin
4b96b3a635 fix incompatibility of flask reload and port searching (#793)
* WIP

* add --developer; fix incompatibility of --port and --debug

* put REST tests on separate ports

* PR review
2019-05-29 16:38:57 -07:00
Colin Megill
862d8feb5e x (#792) 2019-05-29 12:23:30 -04:00
Bruce Martin
1ef77d1596 fix misconfiguration for history management (#787) 2019-05-24 21:01:11 -07:00
Bruce Martin
3dc45d6330 do not hard-wire column names in annotations (#785)
* enforce column name uniqueness for obs and var

* parameterize the column name containing obs and var user-readable names

* use the new annotation index value from schema

* update f/e unit tests

* PR review suggestions

* lint
2019-05-24 21:00:54 -07:00
Bruce Martin
a8c2e408d1 update to latest anndata and remove restriction on scipy (#790) 2019-05-24 11:23:35 -07:00
Bruce Martin
e941c1a496 scaling omitted from event handlers (#789)
* scaling omitted from event handlers

* fix smoke tests
2019-05-24 07:00:04 -07:00
Colin Megill
a657eb3152 Logo (#782)
* logo, black

* fixes

* remove template, move header
2019-05-23 11:47:24 -04:00
Bruce Martin
ef7c26e799 correctly handle selection of trunctated categories (#781) 2019-05-23 08:46:22 -07:00
Bruce Martin
49af278de7 cleanup memoiziation in graph component (#783) 2019-05-22 17:37:18 -07:00
Bruce Martin
2357d0c1b8 layout change UI (#776)
* add layout to schema

* add layout choice action and reducer

* multi layout UI

* update unit tests

* add missing file

* update test schema

* fix duplicate test id

* fix tabs

* PR lint

* fix pytest
2019-05-22 13:21:33 -07:00
Charlotte Weaver
63af79d3f8 Add developer guidelines (#769)
* Add developer guidelines

* minor formatting

* PR clarifications/lint

* more pr fixes

* link fix

* below->above

* pr suggestions
2019-05-21 13:57:34 -07:00
Bruce Martin
fcc05f6a00 coordinate system fixes for embedded graph (#768)
* change pan speed to 1 per issue #722

* correct handle scaling of graph when aspect ratio less than one

* add package lock

* add invert to our scale functions

* correctly transform to/from gl coordinates

* remove unused import

* fix naming of import

* update smoke tests
2019-05-20 14:22:41 -07:00
Bruce Martin
de3407d875 change scripts to support windows (#775) 2019-05-20 11:42:57 -07:00
Charlotte Weaver
2d4e827bea wait for element before getting text/html (#777) 2019-05-20 11:35:53 -07:00
Bruce Martin
1fa4838863 npm (js) package dependency updates (#765)
* JS package dependency updates

* additional package updates

* more package version updates

* more js package updates

* more JS dependency updates
2019-05-20 10:11:49 -07:00
Charlotte Weaver
ab4c74a321 remove psutil (#773) 2019-05-18 10:53:45 -07:00
Charlotte Weaver
82d65addec always run smoke tests (#772) 2019-05-18 10:50:17 -07:00
Charlotte Weaver
e2ad28a510 exclude recent scipy versions (#770) 0.9.3 2019-05-17 15:13:22 -07:00
Bruce Martin
efa1709158 add multi-layout support to back-end (#766)
* add multi-layout support to back-end

* remove obsolete code

* temporary code to apply heuristic choice of default layout

* fix tests

* update python tests

* more py lint

* PR review changes

* more PR lint

* PR lint
2019-05-16 14:49:22 -07:00
Charlotte Weaver
d6040f687a port retry (#761)
* WIP

* import find_available_port method

* move method to utils

so I can add to eventually add to gui

* add fixed-port flag to tests

* Update server/utils/utils.py

Co-Authored-By: Tony Tung <tonytung@merly.org>

* pr review suggestions

* pr review suggestions

* fix outdated package.json

* update error message

* simplify find_available_port function

* Auto scan for ports unless port is specified.

* fix tests

* fix comment for find_available_port

* lint error

* differentiate port error from generic os error

* add errno to OSerror

* pr review fixes

* raise e -> raise

* oserror -> socket error
2019-05-14 14:04:13 -07:00
Bruce Martin
b9a1e30652 large file size guardrails (#763)
* large file guardrails

* fix lint

* PR review

* remove unused import

* use standard slice for CSR

* revert change
2019-05-13 18:13:16 -07:00
Bruce Martin
7adac5d004 create occupancy stacks for all category values, not just top N values (#764) 2019-05-13 11:22:46 -07:00
Charlotte Weaver
2354731083 install from dist instead of build on travis (#760) 2019-05-09 15:32:06 -07:00
Charlotte Weaver
d522cc8f91 Add clipping test to smoke tests (#757)
* Add clipping test to smoke tests

* devtools on in debug
2019-05-09 15:31:55 -07:00
Charlotte Weaver
86eb01eb2c improve release process (#752)
* Add --no-cache-dir to make release-install target

Prevents installing from cache so you get the freshest release

* Testing releases is not optional

* Updated release documentation
2019-05-08 09:36:00 -07:00
Charlotte Weaver
8a94b1e086 fix #754 (#755) 2019-05-07 12:43:20 -07:00
Bruce Martin
846b8d15bd lodash cleanup (#747)
* add own range() function

* lodash cleanup

* remove redundant fill range implementations

* remove use of _.get

* sync test babel config with build

* update tests to match new range implementation
2019-05-06 20:28:32 -04:00
Charlotte Weaver
c12cb2424a release bugfix (#749)
* add __init__.py

* bump version
0.9.1
2019-05-06 10:16:36 -07:00
Bruce Martin
1471d6b214 release 0.9.0 (#746) 0.9.0 2019-05-04 08:41:56 -07:00
Charlotte Weaver
98b63fa9ea Moved to python threads (#745)
So we could use daemon threads
2019-05-03 14:48:48 -07:00
Bruce Martin
0aa0f641ab improve selection interaction with clip changes (#744)
* brush interactions with underlying dataframe updates improved

* improve comment

* reset selection state upon clip
2019-05-03 11:14:30 -07:00
Charlotte Weaver
77a4495b28 Update README.md (#743)
Fixes #702
2019-05-02 16:54:39 -07:00
Bruce Martin
b521a17ffd improve column access speed for sparse matrices (#742)
* improve column access speed for sparse matrices

* add FAQ entry about data format performance

* add note about using --sparse flag for prepare command

* clean up for PR review

* Update docs/faq.md

Co-Authored-By: bkmartinjr <bruce@chanzuckerberg.com>

* improvements to big data faq
2019-05-01 15:44:01 -07:00
Colin Megill
86bf64e793 avoid overflow on clip dialogue (#740) 2019-05-01 15:41:54 -04:00
Charlotte Weaver
8a72010768 PyQt5 -> PySide2 (#738) 2019-05-01 09:03:16 -07:00
Sidney Bell
a08e19bbd0 Clip continuous values based on percentile cutoffs (#672)
* Add numeric inputs for percentiles

* Define initial values for percentile cutoffs in world reducer

* add percentil to crossfilter dimensions

* worldEqUniverse now handles cloned worlds

* add Dataframe.mapColumns

* Wire up handlers for percentile inputs

* World reducer and stateManager know about continuousPercentileMin/Max

* Create world as universe clone (not pointer) to avoid clobbering vals

* Define basic actions for setting continuousPercentileMin/Max

* Under the hood, deal with percentiles between 0 and 1

* Move percentile inputs to visualization settings menu

* Fix padding for undo/redo buttons

* Trigger world rebuild from percentile actions

* BROKEN - pseudocode for clamping dataframe by percentiles upon world rebuild

* fix error handling on clip quantiles; start world clipping implementation

* more unclipped reorg

* rename crossfilter.percentile to quantile

* simplify schema access

* update continuous legend when scale changes

* update color cache when clip changes

* clip obs annotations and var data when clip quantile changes

* use own fromEntries

* fix tests

* stable non-finite float sort/search

* clarify comments

* fix syntax typo

* use new stand-alone clip

* clip expresssion data

* add select tests for non-finite scalars

* basic styles

* clip UI now requires explicit commit

* reset enable/disable accounts for clip percentiles

* better error messages

* fix bug in undo interaction with programatic min brush selection

* small refactoring

* support clipping of int data

* do not perform unnecessary summarizations

* improve caching of dataframe compiled columns

* add percentile precompute to Dataframe.summarize

* use Dataframe.summarize for clip percentiles

* remove obsolete quantile code from corssfilter

* histogram scale and label Y axis, add unclipped X range labels

* layout tweaks

* scatterplot now updates when clip changes

* improve comments

* remove debugging comment

* rework clip number entry validation for usability

* ui tweaks to histogram colors and layout

* enable undo/redo for clip user action

* refine UI on clip value entry

* api cleanup

* update confusing comment

* clarify purpose of isValidDigitKeyEvent

* fix misleading comment

* apply appropriate button-group classes; do not mix span and div

* variable name and comment changes suggested in PR review

* rename sort to sortArray; remove unused and dead code path

* naming changes suggested in PR review

* code review improvements for clarity

* more small changes from PR review

* lint fixes for PR review

* fix spelling error

* clarify that function performs in-place modification of world

* add comment to clarify intent of range operation

* fix bad indents in comments

* clean up __columnsAccessor comments and code

* improve comments around clipPredicate

* field name consistency

* improve comment on quantiles params
2019-04-30 16:20:10 -07:00