Commit Graph
1451 Commits
Author SHA1 Message Date
Colin Megill db957c5de3 gene set button text typo 2021-02-25 12:12:43 -08:00
Colin Megill a01df1151d truncate uses tooltip2 2021-02-25 12:11:38 -08:00
Colin Megill 2953687489 add popper2
upgrade react popper
upgrade react popper
adding popover2 package
2021-02-24 14:10:30 -08:00
Colin Megill dd26addf6f copy correction 2021-02-24 00:45:46 -08:00
Colin Megill 16a0e08250 fix language on create 2021-02-22 09:43:49 -08:00
Colin Megill f5e13d0a71 edit geneset 2021-02-11 00:23:11 -08:00
Colin Megill 9170653296 handle empty string case on genes for create geneset 2021-02-10 16:35:20 -08:00
Colin Megill 4379427a40 Merge remote-tracking branch 'origin/colinmegill/geneset-prototype' into colinmegill/geneset-prototype 2021-02-10 11:27:25 -08:00
Colin Megill ac475d72d9 chevron after 2021-02-10 11:26:50 -08:00
Colin Megill e8f0a1d2cb icons, language consistency 2021-02-10 11:22:36 -08:00
bkmartinjr d068e74f8f add geneset: rename action 2021-02-08 16:17:35 -08:00
Colin Megill fec1736820 prepopulate geneset with genes from modal 2021-01-28 15:07:31 -08:00
Colin Megill 84fcbb8652 handle delete gene from set 2021-01-28 13:54:32 -08:00
Colin Megill 9760277642 prototype: remove csv upload placeholder 2021-01-28 10:34:20 -08:00
Colin Megill 7c0569b9b6 add geneset, add gene, delete set 2021-01-27 13:05:48 -08:00
bkmartinjr b9479705ac rename data-dir cli param 2021-01-23 08:34:58 -08:00
bkmartinjr e0a0b77c5b add autosave 2021-01-22 14:07:34 -08:00
bkmartinjr 023976c992 client/src/actions/ 2021-01-22 14:06:43 -08:00
Colin Megill 996393f260 Merge remote-tracking branch 'origin/colinmegill/geneset-prototype' into colinmegill/geneset-prototype 2021-01-22 12:09:26 -08:00
Colin Megill c6ad970c41 add gene modals 2021-01-22 12:09:22 -08:00
bkmartinjr 0fd9579d00 fix typo 2021-01-22 10:32:54 -08:00
bkmartinjr 818bd9d80f fix sniffing bug 2021-01-21 15:37:43 -08:00
bkmartinjr 0001928317 wire e2e gene set loading prototype 2021-01-21 15:01:10 -08:00
bkmartinjr 7f1bb3e21e add geneset UI reducer 2021-01-19 15:00:49 -08:00
bkmartinjr 91e15e9026 gene set reducer 2021-01-19 14:59:46 -08:00
Colin Megill d1e117ebb9 Merge branch 'main' into colinmegill/geneset-prototype 2021-01-12 13:35:46 -08:00
dependabot[bot] db559467a2 Bump ini from 1.3.5 to 1.3.7 in /client (#2000)
Bumps [ini](https://github.com/isaacs/ini) from 1.3.5 to 1.3.7.
<details>
<summary>Commits</summary>
<ul>
<li><a href="https://github.com/npm/ini/commit/c74c8af35f32b801a7e82a8309eab792a95932f6"><code>c74c8af</code></a> 1.3.7</li>
<li><a href="https://github.com/npm/ini/commit/024b8b55ac1c980c6225607b007714c54eb501ba"><code>024b8b5</code></a> update deps, add linting</li>
<li><a href="https://github.com/npm/ini/commit/032fbaf5f0b98fce70c8cc380e0d05177a9c9073"><code>032fbaf</code></a> Use Object.create(null) to avoid default object property hazards</li>
<li><a href="https://github.com/npm/ini/commit/2da90391ef70db41d10f013e3a87f9a8c5d01a72"><code>2da9039</code></a> 1.3.6</li>
<li><a href="https://github.com/npm/ini/commit/cfea636f534b5ca7550d2c28b7d1a95d936d56c6"><code>cfea636</code></a> better git push script, before publish instead of after</li>
<li><a href="https://github.com/npm/ini/commit/56d2805e07ccd94e2ba0984ac9240ff02d44b6f1"><code>56d2805</code></a> do not allow invalid hazardous string as section name</li>
<li>See full diff in <a href="https://github.com/isaacs/ini/compare/v1.3.5...v1.3.7">compare view</a></li>
</ul>
</details>
<details>
<summary>Maintainer changes</summary>
<p>This version was pushed to npm by <a href="https://www.npmjs.com/~isaacs">isaacs</a>, a new releaser for ini since your current version.</p>
</details>
<br />


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2021-01-04 17:14:45 -08:00
dependabot[bot] 96362b0b98 Bump urijs from 1.19.2 to 1.19.5 in /client (#2012)
Bumps [urijs](https://github.com/medialize/URI.js) from 1.19.2 to 1.19.5.
- [Release notes](https://github.com/medialize/URI.js/releases)
- [Changelog](https://github.com/medialize/URI.js/blob/gh-pages/CHANGELOG.md)
- [Commits](https://github.com/medialize/URI.js/compare/v1.19.2...v1.19.5)

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2021-01-04 16:45:23 -08:00
bmccandless 7599af252d Update compatibility test (#2009)
Add comment in requirements about h5py and anndata.

  #1963
2020-12-21 14:38:07 -06:00
Trent Smith f07e174a06 Fix PR Template (#1999) 2020-12-17 16:29:23 -08:00
Marcus Kinsella 46d02b1987 Handle schema v1.1.0 (#2002)
Correctly display datasets that follow schema version 1.1.0
2020-12-14 15:20:29 -08:00
Colin Megill 8248fce412 Merge branch 'main' into colinmegill/geneset-prototype 2020-12-08 14:51:22 -08:00
Colin Megill 0a9a78bd85 merge main 2020-12-03 15:25:49 -08:00
Severiano Badajoz 0b91371ea8 check if viewport has changed and render accordingly (#1996) 2020-12-03 15:14:57 -08:00
Trent Smith c428242878 pull request template (#1997) 2020-12-03 12:13:31 -08:00
Isaiah Norton 9be086b1e8 Use sparse=True for from_pandas (#1994) 2020-12-02 13:39:19 -08:00
maniarathi 9a34264f92 Pin tiledb version to exclude 0.7.2 (#1993) 2020-11-30 11:54:33 -05:00
maniarathi 66e55ba59a Replace outdated locustio package with locust package. (#1992) 2020-11-30 10:11:57 -05:00
maniarathi f700fb7757 Setup codeql scanning for security and code quality analysis (#1991) 2020-11-24 21:53:10 -05:00
maniarathi ae310097dd Fix typo (#1990) 2020-11-24 12:23:21 -05:00
maniarathi ea70a35a01 Fixing locust scale tests for cellxgene loading apis and adding a Github Actions workflow to run the tests every Sunday. (#1988) 2020-11-24 09:08:57 -08:00
maniarathi 16718f392f Sorry! Undo-ing commit to main 2020-11-24 10:22:24 -05:00
maniarathi ad6b1928e4 Upgrade anndata and h5py 2020-11-24 10:21:24 -05:00
bmccandless 2cc02a84cb Convert float annotations if possible. (#1987)
* Convert float annotations if possible.

The client converts all arrays to floats.
If a category contains integer labels, and that category is copied, it will contains floats (e.g 1.0 instead of 1).
When that category is put back to the server, it fails in the tiledb code, which does not accept floats.
The solution is to convert a float category to integer, if possible.

  #1984

* updates
2020-11-20 17:01:53 -06:00
Marcus Kinsella f77038ad58 Permit other keys in the cxguser cookie (#1982) 2020-11-18 17:58:33 -08:00
Timmy Huang 2cf55ab819 thuang-compress-annotation (#1980)
* thuang-compress-annotation

* compress test

* use zlib.decompress directly
2020-11-17 14:05:07 -08:00
Colin Megill 36939d99fa geneset show mean expression 2020-11-17 12:55:17 -08:00
Colin Megill 0ee62a86a0 render diffexp as geneset 2020-11-17 12:42:16 -08:00
Colin Megill a9665df7e7 move create category to top 2020-11-17 12:13:02 -08:00
Colin Megill f1d53d6dc4 don't clear diffexp on subset 2020-11-17 12:04:23 -08:00