Commit Graph
541 Commits
Author SHA1 Message Date
Colin Megill db957c5de3 gene set button text typo 2021-02-25 12:12:43 -08:00
Colin Megill a01df1151d truncate uses tooltip2 2021-02-25 12:11:38 -08:00
Colin Megill 2953687489 add popper2
upgrade react popper
upgrade react popper
adding popover2 package
2021-02-24 14:10:30 -08:00
Colin Megill dd26addf6f copy correction 2021-02-24 00:45:46 -08:00
Colin Megill 16a0e08250 fix language on create 2021-02-22 09:43:49 -08:00
Colin Megill f5e13d0a71 edit geneset 2021-02-11 00:23:11 -08:00
Colin Megill 9170653296 handle empty string case on genes for create geneset 2021-02-10 16:35:20 -08:00
Colin Megill 4379427a40 Merge remote-tracking branch 'origin/colinmegill/geneset-prototype' into colinmegill/geneset-prototype 2021-02-10 11:27:25 -08:00
Colin Megill ac475d72d9 chevron after 2021-02-10 11:26:50 -08:00
Colin Megill e8f0a1d2cb icons, language consistency 2021-02-10 11:22:36 -08:00
bkmartinjr d068e74f8f add geneset: rename action 2021-02-08 16:17:35 -08:00
Colin Megill fec1736820 prepopulate geneset with genes from modal 2021-01-28 15:07:31 -08:00
Colin Megill 84fcbb8652 handle delete gene from set 2021-01-28 13:54:32 -08:00
Colin Megill 9760277642 prototype: remove csv upload placeholder 2021-01-28 10:34:20 -08:00
Colin Megill 7c0569b9b6 add geneset, add gene, delete set 2021-01-27 13:05:48 -08:00
bkmartinjr e0a0b77c5b add autosave 2021-01-22 14:07:34 -08:00
bkmartinjr 023976c992 client/src/actions/ 2021-01-22 14:06:43 -08:00
Colin Megill 996393f260 Merge remote-tracking branch 'origin/colinmegill/geneset-prototype' into colinmegill/geneset-prototype 2021-01-22 12:09:26 -08:00
Colin Megill c6ad970c41 add gene modals 2021-01-22 12:09:22 -08:00
bkmartinjr 0fd9579d00 fix typo 2021-01-22 10:32:54 -08:00
bkmartinjr 0001928317 wire e2e gene set loading prototype 2021-01-21 15:01:10 -08:00
bkmartinjr 7f1bb3e21e add geneset UI reducer 2021-01-19 15:00:49 -08:00
bkmartinjr 91e15e9026 gene set reducer 2021-01-19 14:59:46 -08:00
Colin Megill d1e117ebb9 Merge branch 'main' into colinmegill/geneset-prototype 2021-01-12 13:35:46 -08:00
dependabot[bot] db559467a2 Bump ini from 1.3.5 to 1.3.7 in /client (#2000)
Bumps [ini](https://github.com/isaacs/ini) from 1.3.5 to 1.3.7.
<details>
<summary>Commits</summary>
<ul>
<li><a href="https://github.com/npm/ini/commit/c74c8af35f32b801a7e82a8309eab792a95932f6"><code>c74c8af</code></a> 1.3.7</li>
<li><a href="https://github.com/npm/ini/commit/024b8b55ac1c980c6225607b007714c54eb501ba"><code>024b8b5</code></a> update deps, add linting</li>
<li><a href="https://github.com/npm/ini/commit/032fbaf5f0b98fce70c8cc380e0d05177a9c9073"><code>032fbaf</code></a> Use Object.create(null) to avoid default object property hazards</li>
<li><a href="https://github.com/npm/ini/commit/2da90391ef70db41d10f013e3a87f9a8c5d01a72"><code>2da9039</code></a> 1.3.6</li>
<li><a href="https://github.com/npm/ini/commit/cfea636f534b5ca7550d2c28b7d1a95d936d56c6"><code>cfea636</code></a> better git push script, before publish instead of after</li>
<li><a href="https://github.com/npm/ini/commit/56d2805e07ccd94e2ba0984ac9240ff02d44b6f1"><code>56d2805</code></a> do not allow invalid hazardous string as section name</li>
<li>See full diff in <a href="https://github.com/isaacs/ini/compare/v1.3.5...v1.3.7">compare view</a></li>
</ul>
</details>
<details>
<summary>Maintainer changes</summary>
<p>This version was pushed to npm by <a href="https://www.npmjs.com/~isaacs">isaacs</a>, a new releaser for ini since your current version.</p>
</details>
<br />


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2021-01-04 17:14:45 -08:00
dependabot[bot] 96362b0b98 Bump urijs from 1.19.2 to 1.19.5 in /client (#2012)
Bumps [urijs](https://github.com/medialize/URI.js) from 1.19.2 to 1.19.5.
- [Release notes](https://github.com/medialize/URI.js/releases)
- [Changelog](https://github.com/medialize/URI.js/blob/gh-pages/CHANGELOG.md)
- [Commits](https://github.com/medialize/URI.js/compare/v1.19.2...v1.19.5)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-01-04 16:45:23 -08:00
Marcus Kinsella 46d02b1987 Handle schema v1.1.0 (#2002)
Correctly display datasets that follow schema version 1.1.0
2020-12-14 15:20:29 -08:00
Colin Megill 8248fce412 Merge branch 'main' into colinmegill/geneset-prototype 2020-12-08 14:51:22 -08:00
Colin Megill 0a9a78bd85 merge main 2020-12-03 15:25:49 -08:00
Severiano Badajoz 0b91371ea8 check if viewport has changed and render accordingly (#1996) 2020-12-03 15:14:57 -08:00
bmccandless 2cc02a84cb Convert float annotations if possible. (#1987)
* Convert float annotations if possible.

The client converts all arrays to floats.
If a category contains integer labels, and that category is copied, it will contains floats (e.g 1.0 instead of 1).
When that category is put back to the server, it fails in the tiledb code, which does not accept floats.
The solution is to convert a float category to integer, if possible.

  #1984

* updates
2020-11-20 17:01:53 -06:00
Timmy Huang 2cf55ab819 thuang-compress-annotation (#1980)
* thuang-compress-annotation

* compress test

* use zlib.decompress directly
2020-11-17 14:05:07 -08:00
Colin Megill 36939d99fa geneset show mean expression 2020-11-17 12:55:17 -08:00
Colin Megill 0ee62a86a0 render diffexp as geneset 2020-11-17 12:42:16 -08:00
Colin Megill a9665df7e7 move create category to top 2020-11-17 12:13:02 -08:00
Colin Megill f1d53d6dc4 don't clear diffexp on subset 2020-11-17 12:04:23 -08:00
Colin Megill db4ac5e1e5 bump number of genes to 50 2020-11-17 11:23:13 -08:00
dependabot[bot]andSeveriano Badajoz 85fc000418 Bump dot-prop from 4.2.0 to 4.2.1 in /client (#1954)
Bumps [dot-prop](https://github.com/sindresorhus/dot-prop) from 4.2.0 to 4.2.1.
- [Release notes](https://github.com/sindresorhus/dot-prop/releases)
- [Commits](https://github.com/sindresorhus/dot-prop/compare/v4.2.0...v4.2.1)

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Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
2020-11-09 22:05:34 -08:00
06b88cda20 do not update GPU buffers if data has not changed (#1967)
Co-authored-by: maniarathi <mani.arathi@gmail.com>
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
2020-11-09 10:41:39 -08:00
Bruce Martin b5856ff9bc fix accidental state error (#1966) 2020-11-04 18:46:04 -08:00
Severiano Badajoz d87551ce5e fix version check (#1968)
Inverted the schema version check so that we check that it IS 1.0.0.

![image](https://user-images.githubusercontent.com/8716829/98184898-5c897b00-1ec0-11eb-89f7-c293dfbe8439.png)
2020-11-04 17:43:41 -08:00
Severiano Badajozandmaniarathi a5c9ae2432 Data drawer final round of prod QA fixes (#1955)
* add long title

* add organism to Dataset Metadata and create headers

* begin HTMLTable for metadata

* switch out truncating for scrolling

* add optional chaining to redux state mapping

Co-authored-by: maniarathi <mani.arathi@gmail.com>
2020-11-04 09:43:43 -08:00
Severiano BadajozandMadison Dunitz 727af83152 remove conditional rendering cases from color legend (#1952)
* Revert "Remove Continuous vars with 1 value from histogram, add to info drawer (#1927)"

This reverts commit 242546371b.

* remove conditional rendering cases

* ignore pointer events

Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com>
2020-10-28 15:35:28 -07:00
Severiano Badajoz 924b518492 Revert "Remove Continuous vars with 1 value from histogram, add to info drawer (#1927)" (#1953)
This reverts commit 242546371b.
2020-10-27 17:12:13 -07:00
maniarathi 9793398737 Add in missing previous crossfilter which was causing the re-embedding feature to fail. (#1936) 2020-10-21 09:16:13 -07:00
Severiano Badajoz c9f9549118 Adopt JS standards once userinfo data is in frontend (#1930) 2020-10-16 11:59:28 -07:00
Madison Dunitz 242546371b Remove Continuous vars with 1 value from histogram, add to info drawer (#1927)
* remove single val continous metadata from histogram, add to info drawer

* refactor to save singleContinuous values in state

* fix edge case, single continuous values reappeard in rsb when clipped
2020-10-14 12:46:24 -05:00
maniarathi 798976e4c1 Fix custom color handling (#1929) 2020-10-13 15:47:56 -07:00
maniarathi 5325495123 Speed up dataset drawer rendering (#1926) 2020-10-12 11:20:58 -07:00
Severiano Badajozandczimergebot beb46bf3df add and check system arg to state auth type in e2e test(#1924)
* add and check system arg to state auth type

* add tolower

Co-authored-by: czimergebot <35308261+czimergebot@users.noreply.github.com>
2020-10-09 12:42:02 -06:00