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Author SHA1 Message Date
Colin Megill 64bd908c25 Render categories with one label without checkbox (#1375) 
* categories with 1 item rendered without checkbox

* break out into helper functions

* prettier
 2020-04-13 23:04:23 -04:00
Colin Megill adf7010f50 Add TOS and Privacy url via config (#1300) 
* add tos and privacy url via config

* typo

* readd condition

* param
 2020-03-26 11:33:41 -04:00
Colin Megill c4731d52e2 target blank (#1254) 2020-03-20 20:07:51 -04:00
Colin MegillandMatt Weiden 234f25b782 Conditionally truncate category string (#1206) 
* maybe truncate string

* add string formatting to test

* correct import

* destructuring

* add maxlength

* test

* Respond to feedback from @bkmartinjr

Co-authored-by: Matt Weiden <538456+mweiden@users.noreply.github.com>
 2020-03-10 18:14:26 -07:00
Colin Megill 1a93068810 Prevent category collapsing on annotation edit, # of cells on add label button (#1204) 
* collapse functionality

* expand collapse
 2020-03-10 13:21:06 -04:00
Colin Megill 9bdcf44564 Separate ontologies dialogue (#1126) 
* componetization

* Ontologies as own menu option

* remove log

* remove dead suggest module
 2020-01-27 15:10:57 -05:00
Colin MegillBruce MartinSidney Bell
 		d48647a655 Ontologies (#1110) 
* add sample ontologies file

* add ontologies reducer

* Move select category to own component

* Dialog and Input factored out

* refactoring categorical, partway

* validationn

* anno

* suggest  populates input

* frontend for ontology working

* initial implementation of back-end support for ontologies

* edit is now dialog again

* autosuggest working on edit

* part way through create arbitrary label

* handle choice in function

* pass duplicate cat  prop

* editing works

* update test to match new CLI params

* fix occupancy alignment

* edit category as dialogue

* secondary button

* remove stubbed out ontologies

* add label setting upon new label creation

* Update legal characters for labels (#1119)

* Allow any term in the ontology (bypass legal name check)

* Add hyphens and parens to legal characters in names

* improve performance for large ontologies

* correctly handle case where ontologies are disabled

* fix logic error in CLI

Co-authored-by: Bruce Martin <bruce@chanzuckerberg.com>

* PR cleanup 1

* lint

* validate user generated labels

* finish hooking up connected suggest component

* protect against undefined callbacks

* Fix illegal characters error message

* break out npm run commands

* fix error detection on label edit

Co-authored-by: Bruce Martin <bruce@chanzuckerberg.com>
Co-authored-by: Sidney Bell <sidneymbell@users.noreply.github.com>
 2020-01-23 17:04:17 -05:00
Colin Megill c2ededfc62 Anno editing label/category error states (#1048) 
* anno error states

* label validation should not treat empty string as error

* disable Submit if no label or category entered

* edit category name error states

* flex start

* pr cleanup

* label name validation fixes

* PR comment responses
 2019-11-21 19:08:29 -05:00
Colin Megill 89d748b007 state (#1032) 2019-11-13 15:13:15 -05:00
Colin Megill cadf710bf8 remove duplicate handler (#1027) 2019-11-08 11:18:29 -05:00
Colin Megill 84900bad0e Warnings on anno textfields (#1023) 
*  Warning for creating new label with an existing name

* category dup

* italics
 2019-11-07 18:57:15 -05:00
Colin Megill 4c3d783fc8 Continuous data in right sidebar (#985) 
* Create right sidebar files, move histos over

* restructure continuous legend + all padding

* right sidebar file

* proper graph positioning and resize

* new lasso values since right sidebar

* fix autosave position
 2019-11-05 20:29:21 -05:00
Colin Megill e50fd8b881 Animate list items on name change (#1008) 
* animate list items

* fix comment
 2019-11-04 14:09:16 -05:00
Colin Megill 3f0567c59f disable editing if already editing (#999) 2019-10-31 13:46:59 -04:00
Colin Megill 934f61f2a1 categoryAddingNewLabel (#995) 2019-10-24 22:02:38 -04:00
Colin Megill 1467357db5 re-label (#973) 2019-10-07 16:02:09 -04:00
Colin Megill 296352b620 remove modal for inline edit category name, and autofocus (#962) 
* remove modal for inline edit category name, and autofocus

* remove comment, rename to categorybeingedited
 2019-10-04 13:41:05 -04:00
Colin Megill e64f4f06fb enter submits modals (#945) 2019-09-25 15:18:33 -07:00
Colin Megill 197ea9214a fix italic (#935) 2019-09-18 19:36:49 -04:00
Colin Megill 81e57afe29 Anno fixes (easy) (#925) 
* change wording from value to label

* tooltip position

* Padding for text & code whitespace
 2019-09-18 19:22:51 -04:00
Colin Megill ec4da63408 Format histogram axes: 200,000 --> 200k (#913) 
* remove dead file

* tickformat
 2019-09-16 17:07:51 -04:00
Colin Megill 03baa1ac0b overflow title (#858) 2019-08-05 14:08:41 -04:00
Colin Megill d16a69e158 bump version to 0.11.0 (#850) 
* bump version to 0.11.0

* manually fix version number
 2019-07-16 14:27:41 -04:00
Colin Megill 777214cc14 upgrade lodash (#844) 2019-07-11 18:35:57 -04:00
Colin Megill 6aeefb0fe6 menubar (#804) 
* menubar 1

* zoom switching

* centering, pixel perfect canvas

* remove dead args and code

* clipping

* remove log

* if

* connect props

* lint

* undo

* logo left, componetize

* graph back to full height

* shadow to top

* do not prematurely call event handlers during render

* change test to deal with async histogram creation

* left section padding

* lint

* adjust graph to account for top bar,

* lasso tests

* refine histogram tests

* remove testing (onlys)
 2019-06-13 15:15:43 -07:00
Colin Megill 862d8feb5e x (#792) 2019-05-29 12:23:30 -04:00
Colin Megill a657eb3152 Logo (#782) 
* logo, black

* fixes

* remove template, move header
 2019-05-23 11:47:24 -04:00
Colin Megill 86bf64e793 avoid overflow on clip dialogue (#740) 2019-05-01 15:41:54 -04:00
Colin Megill b878b0f93c Gene typeahead stale state (#714) 
* reimplementing suggest

* resolve stale state
 2019-04-17 14:03:10 -04:00
Colin Megill 016a4a422a Procedurally resize brush (#650) 
* add on brush end event

* brush snap move

* resize brush
 2019-03-20 14:46:20 -07:00
Colin Megill 8795f0f32c Add test ids and classes (#633) 
* data test ids and classes

* suggest
 2019-03-07 13:01:41 -08:00
Colin Megill a0f54b4871 Add menu (#631) 
* add menu

* Added library versions to config

and tests

* add template version number
 2019-03-06 11:56:46 -05:00
Colin Megill dbb3a309a9 Lasso (#586) 
* lasso working

* break out invert into own function

* action

* add spatial dimension to crossfilter, in support of polygon lasso

* improve comments on new dimension API

* lasso vs zoom
 2019-02-08 11:48:51 -08:00
Colin Megill 08ea7d5137 Better input validation (#580) 2019-02-05 10:44:59 -05:00
Colin Megill 2df7161cd8 Bulk add genes (#567) 
* bulk add

* cleanup
 2019-01-29 16:26:09 -05:00
Colin Megill 3fa888c6d4 user defined gene sets scatterplot, remove works (#556) 2019-01-16 03:37:08 -05:00
Colin Megill a42c9aca1c resetting interface spinner but locked interface (#555) 2019-01-16 03:36:35 -05:00
Colin Megill f876a0091a Set theme jekyll-theme-cayman 2019-01-10 12:12:58 -05:00
Colin Megill 528eb5d172 Set theme jekyll-theme-minimal 2019-01-10 12:10:11 -05:00
Colin Megill 42e25a1a1f Async on long running operations (#543) 
* compute differential button

* add user gene loading state to reducer

* create input group, consume usergeneloading

* add loading state
 2019-01-07 16:45:47 -05:00
Colin Megill b0daeb3a9b disable cell set buttons (#538) 2019-01-03 20:05:09 -05:00
Colin Megill d3c96087b2 Add GIFs to docs (#537) 
* Add gif files

* rename gif for clarity

* add gifs

* reorder

* resize
 2019-01-03 15:24:33 -05:00
Colin Megill 56f9bc543e Set theme jekyll-theme-minimal 2018-12-20 12:05:08 -05:00
Colin Megill a297ea30e2 bump version (#518) 2018-12-17 14:30:34 -05:00
Colin Megill 0ef6c36f4c Cluster Occupancy (n dim cube) (#513) 
* create occupancy component

* occupancy working

* centering, width, flex spacing

* add is-number

* extend sort to cover string + int

* proof of concept sorted occupancy

* handle undefined occupancy entry, cleanup

* only render occupancy when colorby is cat

* cleanup unused vars

* cleanup
 2018-12-17 14:19:48 -05:00
Colin Megill 126cac833a Rename README.md to index.md 2018-12-11 12:09:16 -05:00
Colin Megill fc272dc42e github pages test 2018-12-11 12:05:14 -05:00
Colin Megill d3a0d66139 Set theme jekyll-theme-architect 2018-12-10 18:16:40 -05:00
Colin Megill 00b9a8fa72 Fuzzy search on genes (#473) 
* proof of concept blueprint typeahead

* poc with fuzzysearch lib

* typeahead adds gene on enter

* add gene on menu click

* typeahead clears correctly

* cleanup
 2018-11-28 09:50:02 -08:00
Colin Megill ef80c8df2a Change color scales to rainbow (#449) 
* rainbow

* eslint

* remove comments
 2018-11-15 18:17:55 -08:00
Colin Megill dbff824854 Viewport fills entire screen (#430) 
* full pane webgl and svg

* fixes for full pane selection and centering

* force graph remount, clear brush state
 2018-11-13 11:45:38 -05:00
Colin Megill 9decf134e0 fixed scatterplot infinite render (#429) 
* add more to state from componentDidMount

* always brush

* destructure

* move render to function

* fixed scatterplot infinite render

* remove logging
 2018-11-09 20:28:22 -05:00
Colin Megill 0dcc17d6d5 rerender axes on regraph (#403) 
* remove cells loading now that we have toast

* rerender histogram axes

* remove logging
 2018-11-05 09:29:49 -05:00
Colin Megill ed66ae6e4a tooltips, copy, scatterplot tray (#383) 
* tooltips, copy, scatterplot tray

* reset interface

* copy
 2018-10-26 19:21:39 -04:00
Colin Megill d221d76be6 test for world, graph border, legend label (#378) 
* test for world, graph border, legend label

* typo
 2018-10-25 12:16:55 -04:00
Colin Megill 7aa390b5a1 left sidebar improvements (#368) 
* left sidebar improvements

* lint
 2018-10-24 10:21:18 -04:00
Colin Megill 96675f806c hotfix duplicate globals declaration 2018-10-22 16:39:41 -04:00
Colin Megill df671192be Begin integrating blueprint (#359) 
* toast test

* modify webpack build to allow for global CSS; use CSS modules to scope component styling

* remove heatmap

* add label to index resets

* swapping out buttons for blueprint

* adding constants to globals

* swapping out blueprint buttons

* title position, sidebar improvements

* sidebar styles

* adding toasts for validation errors

* zebra section trial

* integrating blueprint, switching buttons over, breaking out scatter

* clean up console
 2018-10-22 15:46:37 -04:00
Colin Megill 952578680a Remove heatmap, add diffexp info to histograms (#339) 
* Create Release_Validation_Recipe.md

* compose middle ware for redux devtools

* update package.json and lock

* remove heatmap, add to left side bar

* redux devtools extension
 2018-10-16 16:29:20 -07:00
Colin Megill 65f5244ff7 add name getter to world test 2018-10-15 11:20:52 -07:00
Colin Megill e7642e6a8f remove log 2018-10-15 11:20:52 -07:00
Colin Megill 8114d7565a dispose and delete 2018-10-15 11:20:52 -07:00
Colin Megill 8e08534d42 user defined gene 2018-10-15 11:20:52 -07:00
Colin Megill 2b77f8146b namespacing 2018-10-15 11:20:52 -07:00
Colin Megill e1a437514e clean up log 2018-10-15 11:20:52 -07:00
Colin Megill 48fa221ad9 diffexp, regraph, brush 2018-10-15 11:20:52 -07:00
Colin Megill fff331e1f0 stub additional validation for gene name 2018-10-15 11:20:52 -07:00
Colin Megill 8d07b400be adding and removing user defined genes 2018-10-15 11:20:52 -07:00
Colin Megill 5b2c07f105 clear differential reducer 2018-10-15 11:20:52 -07:00
Colin Megill ca35ae0b40 cleanup in histogram 2018-10-15 11:20:52 -07:00
Colin Megill 1cf9fc76b0 break out differential genes from user defined 2018-10-15 11:20:52 -07:00
Colin Megill a42f9f83f5 clear differential expression button interface 2018-10-15 11:20:52 -07:00
Colin Megill 9de44e6fd4 clear differential expression reducer 2018-10-15 11:20:52 -07:00
Colin Megill ca37483447 remove old heatmap webgl code 2018-10-15 11:20:52 -07:00
Colin Megill dd1b9229fc access varDataCache with kvCache.get 2018-10-15 11:20:52 -07:00
Colin Megill 73f55cb9f8 obs index to index 2018-10-15 11:20:52 -07:00
Colin Megill 8aa75458ed brushable histogram renders genes 2018-10-15 11:20:52 -07:00
Colin Megill 0c8f4ed824 rename to createVarDimension 2018-10-15 11:20:52 -07:00
Colin Megill 5165297e2a position tweak 2018-10-15 11:20:52 -07:00
Colin Megill 9c8e0e76ad remove export 2018-10-15 11:20:52 -07:00
Colin Megill 693dc7be12 switch to roboto condensed for space 2018-10-15 11:20:52 -07:00
Colin Megill 090bad040e worldIndex returns NaN 2018-10-15 11:20:52 -07:00
Colin Megill a297956e69 add world helper method for var 2018-10-15 11:20:52 -07:00
Colin Megill b0603dbed7 create dimension for arbitrary gene 2018-10-15 11:20:52 -07:00
Colin Megill 30069c0e66 export request genes action for use from components 2018-10-15 11:20:52 -07:00
Colin Megill 2c74291ee9 add gene expression section to left sidebar 2018-10-15 11:20:52 -07:00
Colin Megill f7abee5156 kill logging 2018-08-19 19:57:43 -04:00
Colin Megill fddf114076 don't render anything until everything loads 2018-08-19 19:57:26 -04:00
Colin Megill d550b5503d graph needs to know about first time rendering 2018-08-19 19:57:11 -04:00
Colin Megill 743eee3d78 maximize space for heatmap 2018-08-19 19:20:57 -04:00
Colin Megill d492e129d0 standardize buttons, move diffexp to lower right 2018-08-19 19:19:22 -04:00
Colin Megill 6665f55075 Merge pull request #193 from chanzuckerberg/#175-d3-globals 
Remove d3 global import / add to bundle
 2018-08-16 10:58:48 -04:00
Colin Megill 44ef1af863 with direct imports of viridis scale, 2 packages no longer needed 2018-08-16 10:14:25 -04:00
Colin Megill 6fd7f23364 dead code cleanup 2018-08-16 10:13:13 -04:00
Colin Megill 3c9de7be9e add d3 and scale chromatic imports 2018-08-16 10:11:18 -04:00
Colin Megill 3087c173e6 remove import for joyplots 2018-08-16 10:07:26 -04:00
Colin Megill e4cd873b21 better positioning of continuous paintbrushes 2018-08-16 10:07:08 -04:00
Colin Megill 67bf7491c6 add d3 packages via npm 2018-08-16 10:06:46 -04:00
Colin Megill 531e60caa4 remove d3 script tags in index 2018-08-16 10:06:09 -04:00
Colin Megill 985cc0de94 update webpack config rules 2018-08-13 17:07:00 -07:00