fork/cellxgene
1
0
Fork 0
mirror of https://github.com/chanzuckerberg/cellxgene.git synced 2026-09-15 20:57:56 +08:00
Code Issues Packages Projects Releases Wiki Activity
1,569 Commits 22 Branches 50 Tags
1.2.0
Commit Graph

1569 Commits

This Branch
This Branch
All Branches
Author SHA1 Message Date
atarashansky
74fbec35fe chore: Release version 1.2.0 (#2652) 
* Bump version: 1.1.2 → 1.2.0-rc.0

* Bump version: 1.2.0-rc.0 → 1.2.0
v1.2.0 1.2.0 		2023-12-19 14:13:08 -08:00
atarashansky
5d4c782f3a chore: lower pinned requirements for backend server (#2651) 
* chore: lower pinned requirements for backend server

* update one requirement
 2023-12-19 13:39:47 -08:00
atarashansky
6505f6cbf5 chore: upgrade backend dependencies (#2641) 
chore: upgrade backend dependencies (#2641)
 2023-11-29 14:16:39 -08:00
Severiano Badajoz
4bb9a2b834 chore: update dependencies (#2636) 
* chore: update dependencies

* fix babel plugins and lint errors

* switch out obselete browser plugin

* add babel config for jest

* revert some babel/jest package bumps

* npm install

* tmp remove werkzeug pin

---------

Co-authored-by: Seve Badajoz <severiano.badajoz@chanzuckerberg.com>
 2023-10-20 21:08:09 -04:00
maniarathi
2d7aab3a9a fix: override default so that issues are not marked as stale (#2627) 2023-08-23 21:22:17 -04:00
maniarathi
f749733d54 feat: Add a Github Action that automatically closes stale PRs. (#2626) 2023-08-22 22:08:22 -04:00
atarashansky
ffcf6eb5d8 chore: Release version 1.1.2 (#2611) 
* Bump version: 1.1.1 → 1.1.2-rc.0

* fix: release candidate 1.1.2

* Bump version: 1.1.2-rc.0 → 1.1.2

* promote

---------

Co-authored-by: atarashansky <atarashansky@CZIMACOS3990.hsd1.ma.comcast.net>
1.1.2 		2023-04-26 15:01:57 -04:00
atarashansky
c209a9bca7 fix: pin flask requirement to be less than 2.3 (#2609) 
Co-authored-by: atarashansky <atarashansky@CZIMACOS3990.hsd1.ma.comcast.net>
 2023-04-26 13:58:40 -04:00
Kuni Katsuya
85319d45a4 chore: tech issue template 2023-02-06 15:46:54 -08:00
Andrew Tolopko
514f1627ea Update license copyright year (#2600) 2023-02-03 16:01:53 -05:00
Severiano Badajoz
127de34a20 feat: Add PR Linting (#2560) 2022-10-24 18:08:25 +00:00
Andrew Tolopko
54ab9d79b6 docs: fix test pypi install command (#2515) 
fix test pypi install command in release_process.md
 2022-09-29 19:30:11 +00:00
Andrew Tolopko
f48d06fb90 Bump version: 1.1.0 → 1.1.1 (#2572) 1.1.1 2022-09-21 15:33:28 -04:00
Severiano Badajoz
84563291a0 fix: fix static file serving in webpack (#2574) 
Co-authored-by: Seve Badajoz <severiano.badajoz@chanzuckerberg.com>
 2022-09-21 18:03:03 +00:00
Andrew Tolopko
ddb601c103 feat: annotate command improvements (#2568) 
* Replace --input-h5ad-file with a positional argument, for consistency with other CLI commands
* Replace --update-h5ad-file with --overwrite, for consistency with `prepare` command.
* Fix/clarify various help descriptions
* Fix final output message when input file is overwritten
* Fix annotate top-level help description
 2022-09-15 11:55:58 -04:00
ashin-czi
450261f109 chore: updating Annotate favicon and logo icon (#2556) 
* chore: replacing html icon with png icon and updating favicon
 2022-08-25 16:01:03 +00:00
ashin-czi
c0f4ad6dfa docs: updating readme and display version for rebranding (#2550) 
* docs: updating readme and display version for rebranding

- CELLxGENE -> CELLxGENE Annotate
- reverting __init__.py display_version back to "cellxgene"
- changing page titles to "CELLxGENE | Annotate"
 2022-08-25 15:41:26 +00:00
atarashansky
ff5da77372 fix unit tests (#2562) 
Co-authored-by: atarashansky <atarashansky@CZIMACOS3990.local>
 2022-08-25 08:02:58 -07:00
Andrew Tolopko
a9044b01df release version 1.1.0 (#2548) 
* Bump version: 1.0.1 → 1.1.0-rc.0

* bump version to v1.1.0

* Bump version: 1.1.0-rc.0 → 1.1.0-rc.1

* bump version to v1.1.0 rc1

rc0 was previously used by an aborted release attempt

* Bump version: 1.1.0-rc.1 → 1.1.0

Co-authored-by: Seve Badajoz <severiano.badajoz@chanzuckerberg.com>
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
 2022-08-23 10:02:23 -07:00
ashin-czi
11b948369f fix: reverting back to old icon 2022-08-18 14:49:59 -04:00
ashin-czi
a2dc0c25b1 chore: updating Annotate favicon 2022-08-11 13:30:19 -04:00
Andrew Tolopko
a9ef01a6f9 fix test (#2549) 
address issues building mlflow model in GHA test env
1.1.0 v1.1.0 		2022-07-29 11:17:04 -04:00
Andrew Tolopko
03d9e8e6aa fix unit test 
avoid performing pip installs for mlflow-based tests
 2022-07-29 09:57:55 -04:00
Andrew Tolopko
30e19e47c6 feat: add cli annotation subcommand (#2539) 
add `cellxgene annotate` subcommand for invoking MLflow model to generate new `obs` annotations, initially intended for cell type annotations.
 2022-07-29 05:15:54 -07:00
Emanuele Bezzi
d2b20129f7 use fsspec.download for S3 artifacts + additional logging (#2536) 2022-07-29 11:05:36 +00:00
Rohan Agarwal
6c86216f6b Update actions/setup-python version (#2528) 2022-07-28 21:17:46 +00:00
Andrew Tolopko
4df50a7677 fix: s3 user annotations (#2541) 
do _not_ attempt to create the user annotations directory if an s3 location is specified
 2022-07-28 20:00:15 +00:00
Andrew Tolopko
69a6d52240 fix embedding selection (#2543) 
reverted code to previous implementation that was presumably changed due to a "destructuring assignment" lint error; explicitly ignoring error now
 2022-07-28 15:49:33 -04:00
Andrew Tolopko
06da05eb9f skip failing tests to unblock adding of new features (#2545) 
skipped tests will be reinstated in future issues
 2022-07-28 15:11:36 -04:00
Severiano Badajoz
d753441acc chore(webpack): remove script-ext-html-webpack-plugin (#2534) 
Co-authored-by: Seve Badajoz <severiano.badajoz@chanzuckerberg.com>
 2022-07-12 13:42:20 -04:00
Rohan Agarwal
8b4c1e418e chore: replace optimize-css-assets-webpack-plugin with css-minimizer-webpack-plugin (#2525) 
* Replace optimize-css-assets-webpack-plugin with css-minimizer-webpack-plugin

* Fix lint issues in JS

* remove favicons

* update snapshots

* update annotations snapshots

Co-authored-by: Trent Smith <1429913+Bento007@users.noreply.github.com>
Co-authored-by: Seve Badajoz <sbadajoz@chanzuckerberg.com>
 2022-06-07 13:13:17 -07:00
Madison Dunitz
f2bd6ebce1 remove unnecessary postgres req (#2524) 2022-05-27 12:15:17 -07:00
Bruce Martin
de44739f8b add fsspec support to gene set and cell annotations (#2512) 2022-04-20 18:18:47 -07:00
Severiano Badajoz
002c9a5c7f release version 1.0.1 (#2497) 
* Bump version: 1.0.0 → 1.0.1-rc.0

* Bump version: 1.0.1-rc.0 → 1.0.1
1.0.1 		2022-02-28 15:18:21 -08:00
dependabot[bot]
e6a0351079 chore(deps): bump nanoid from 3.1.25 to 3.3.1 in /client (#2488) 
Bumps [nanoid](https://github.com/ai/nanoid) from 3.1.25 to 3.3.1.
- [Release notes](https://github.com/ai/nanoid/releases)
- [Changelog](https://github.com/ai/nanoid/blob/main/CHANGELOG.md)
- [Commits](https://github.com/ai/nanoid/compare/3.1.25...3.3.1)

---
updated-dependencies:
- dependency-name: nanoid
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-02-25 09:57:22 -08:00
dependabot[bot]
38fdc649f5 chore(deps): bump axios from 0.21.1 to 0.21.4 in /client (#2491) 
Bumps [axios](https://github.com/axios/axios) from 0.21.1 to 0.21.4.
- [Release notes](https://github.com/axios/axios/releases)
- [Changelog](https://github.com/axios/axios/blob/master/CHANGELOG.md)
- [Commits](https://github.com/axios/axios/compare/v0.21.1...v0.21.4)

---
updated-dependencies:
- dependency-name: axios
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-02-24 14:20:17 -08:00
dependabot[bot]
69a5d5e837 chore(deps): bump tmpl from 1.0.4 to 1.0.5 in /client (#2490) 
Bumps [tmpl](https://github.com/daaku/nodejs-tmpl) from 1.0.4 to 1.0.5.
- [Release notes](https://github.com/daaku/nodejs-tmpl/releases)
- [Commits](https://github.com/daaku/nodejs-tmpl/commits/v1.0.5)

---
updated-dependencies:
- dependency-name: tmpl
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-02-24 14:05:26 -08:00
dependabot[bot]
b854c58eea chore(deps): bump simple-get from 3.1.0 to 3.1.1 in /client (#2489) 
Bumps [simple-get](https://github.com/feross/simple-get) from 3.1.0 to 3.1.1.
- [Release notes](https://github.com/feross/simple-get/releases)
- [Commits](https://github.com/feross/simple-get/compare/v3.1.0...v3.1.1)

---
updated-dependencies:
- dependency-name: simple-get
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-02-24 13:46:07 -08:00
dependabot[bot]
2d650ba50d chore(deps): bump follow-redirects from 1.14.2 to 1.14.8 in /client (#2484) 
Bumps [follow-redirects](https://github.com/follow-redirects/follow-redirects) from 1.14.2 to 1.14.8.
- [Release notes](https://github.com/follow-redirects/follow-redirects/releases)
- [Commits](https://github.com/follow-redirects/follow-redirects/compare/v1.14.2...v1.14.8)

---
updated-dependencies:
- dependency-name: follow-redirects
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-02-24 11:57:08 -08:00
Ben MR
8bac98f25c Fix float16 support [#2379] (#2483) 
* Fix float16 support [#2379]

Convert to float32 on startup unless backed, in which case error. scipy does not support complex slicing from float16 data so this is the easiest fix for now.

* minor msg change
 2022-02-10 15:20:47 -08:00
maniarathi
ceb0cc6f27 Update license to 2022. (#2478) 2022-01-14 14:07:35 -05:00
Severiano Badajoz
853976b716 release version 1.0.0 (#2466) 
* Bump version: 0.19.0 → 1.0.0-rc.0

* Bump version: 1.0.0-rc.0 → 1.0.0
1.0.0 		2021-11-02 14:53:26 -07:00
Emanuele Bezzi
a344f292a9 Restore logo and favicon in docs/ (#2464) 2021-10-14 21:13:04 +00:00
Emanuele Bezzi
15d2ce62b8 Migrate to the new documentation website (#2456) 2021-10-14 20:54:54 +00:00
Colin Megill
8e011314e9 Remove log (#2463) 2021-10-14 18:02:54 +00:00
Ben MR
c81731d32c [FE: fix #2371] fix for when labels are null (#2462) 
Categoricals can have nulls
 2021-10-05 12:17:34 -07:00
Colin Megill
3b091d888d Update diffexpButtons.js (#2461) 2021-10-04 15:35:55 -07:00
Timmy Huang
79aeedc6c3 refactor: 2235 remove cookie banner (#2459) 2021-10-04 11:26:01 -07:00
Colin Megill
e6bacf043b typo fix (#2460) 2021-10-01 18:28:47 -07:00
Colin Megill
be020deaa6 Update infoMenu.js (#2455) 
Fixes #2452
 2021-09-29 13:00:55 -07:00