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300 Commits 11 Branches 54 Tags
03cf0d475c4174202229b5a1524906da53f828e0
Commit Graph

30 Commits

Author SHA1 Message Date
chhylp123
03cf0d475c save bfore multiple overlaps 2020-08-23 08:46:33 -04:00
chhylp123
a25c37ed89 update k-mer peaks 2020-07-07 13:20:25 -04:00
Heng Li
c4397a9400 r226: more careful about ma_hit_t_alloc memory 2020-04-11 22:05:07 -04:00
chhylp123
87fc103e63 fix small bug 2020-04-06 02:03:34 -04:00
Heng Li
76de054331 r186: fixed memory leaks when loading from disk 2020-04-03 20:35:47 -04:00
Heng Li
992322f8e3 r185: fixed a few more memory leaks 2020-04-03 20:14:20 -04:00
Heng Li
d529dcea3f r183: reorganized the major workflow 2020-04-03 13:34:07 -04:00
Heng Li
8f664f80ce removed the hifiasm FASTA/Q reader 2020-03-26 16:26:54 -04:00
Heng Li
387d6336d8 read from read store 2020-03-26 15:17:49 -04:00
Heng Li
0dd927bdce write to hifiasm read store 2020-03-26 14:23:17 -04:00
Heng Li
c3bbaa8a39 prepare for integration with hifiasm 2020-03-26 11:33:52 -04:00
chhylp123
c72d419711 for hifiasm 3.0 2020-03-22 16:54:32 -04:00
Haoyu Cheng
1523d10291 README 2019-12-28 04:45:53 -05:00
Heng Li
03c8899a34 fixed clang warnings 2019-12-26 09:40:35 -05:00
Haoyu Cheng
4ac9907e49 clean code 2019-12-26 02:26:24 -05:00
Haoyu Cheng
1ead2d3081 M50 improved 2019-12-23 09:37:26 -05:00
Haoyu Cheng
ada03ea388 final DP-based assembly 2019-11-13 20:18:11 -05:00
Haoyu Cheng
b57923d050 2019_9_5 2019-09-05 11:47:54 -04:00
Haoyu Cheng
d5327fe9ee phasing 2019-09-02 10:30:14 -04:00
Haoyu Cheng
3c0c201cdf improve speed 2019-08-26 02:22:20 -04:00
Haoyu Cheng
87873d6323 edit distance based error correction 2019-07-07 03:44:59 -04:00
Haoyu Cheng
b553f3ac5e POA 2019-07-01 09:08:25 -04:00
Haoyu Cheng
7cebaf271b Fix bug 2019-05-17 00:52:10 -04:00
Haoyu Cheng
17553e0a42 S/L index&reads 2019-05-16 21:14:50 -04:00
Haoyu Cheng
3c5799aa1b Reduce memory requirement 2019-05-16 00:22:20 -04:00
Haoyu Cheng
45355a1103 Update position hash table 2019-05-14 17:02:03 -04:00
Haoyu Cheng
9302fc6058 Finish multiple thread counting 2019-05-12 02:16:20 -04:00
Haoyu Cheng
94bd75e576 Multiple threads reading 2019-05-11 00:19:16 -04:00
Haoyu Cheng
eee68408be Using klib 2019-05-10 16:14:01 -04:00
Haoyu Cheng
0b209dd1e9 Input reads 2019-05-10 00:11:19 -04:00