202 Commits

Author	SHA1	Message	Date
chhylp123	0613b18af9	r493 ->HiC/UL/Trans	2023-01-11 20:38:45 -05:00
chhylp123	a674110b23	fixed het/hom node bugs	2022-12-08 03:07:14 -05:00
chhylp123	a3b72457f0	cleaner assembly graph	2022-12-06 09:52:00 -05:00
chhylp123	786f8bdff0	r465	2022-12-02 09:40:25 -05:00
chhylp123	a4d6cebc32	slightly better assembly graph	2022-11-28 14:42:48 -05:00
chhylp123	9a454576e1	fixed memory issue within gen_single_khit	2022-11-25 20:49:14 -05:00
chhylp123	6de08fd91f	debug assert	2022-11-25 15:20:32 -05:00
chhylp123	fc76af1285	fixed gap filling with UL	2022-11-25 11:46:37 -05:00
chhylp123	979d83f68d	0.17.4-r455	2022-11-17 18:05:35 -05:00
chhylp123	9747c42123	r454	2022-11-17 18:02:52 -05:00
chhylp123	553a8745cc	bugs for bubble/hom assembly	2022-11-17 18:01:08 -05:00
chhylp123	152bae2dfb	fix utg el bug	2022-11-17 12:18:40 -05:00
chhylp123	9831afaf26	code clean	2022-11-17 09:31:56 -05:00
chhylp123	2c7b164f11	tmp cache	2022-11-10 19:37:52 -05:00
chhylp123	46acc8a2f6	version with wrong realignment	2022-11-07 02:35:26 -05:00
chhylp123	612c1ab712	cuttoff before debugging	2022-11-05 09:03:23 -04:00
chhylp123	e66c003b65	cleaner graph	2022-11-01 21:44:13 -04:00
chhylp123	f4b6223fde	cutoff-r426-avoid-tip	2022-10-31 15:18:52 -04:00
chhylp123	2443e63ef5	done chaining	2022-10-08 14:51:03 -04:00
chhylp123	5da05f308f	extend ed alignment	2022-09-13 17:29:27 -04:00
chhylp123	8b7ca5f0c3	revised HiFi phasing	2022-08-23 10:36:35 -04:00
chhylp123	54465dd9ac	tangle resolved	2022-08-16 23:35:56 -04:00
chhylp123	89e0d1aafa	UL graph with graph cleaning	2022-08-02 15:48:16 -04:00
chhylp123	91de382bde	before contain keeping	2022-07-27 10:41:57 -04:00
chhylp123	138610b049	ul coordinates fixed	2022-06-25 21:52:56 -04:00
chhylp123	0a8c064734	read alignment extension debugging	2022-06-24 18:07:15 -04:00
chhylp123	a82e05c9f2	fix gap alignment extention	2022-06-23 22:11:28 -04:00
chhylp123	8f1c59a5da	all alignments have done/been improved	2022-05-16 20:58:29 -04:00
chhylp123	74ad15846e	small bugs fixed	2022-05-14 22:07:55 -04:00
chhylp123	dd8888aa90	backup for memory issues	2022-05-05 19:35:06 -04:00
chhylp123	8a2bb0b112	memory debugging	2022-05-04 20:22:50 -04:00
chhylp123	e8399b18f1	fixed duplicated chaining issue	2022-05-03 17:35:43 -04:00
chhylp123	8138941a26	new realignment	2022-05-03 00:59:24 -04:00
chhylp123	fdf24d5589	fix memory bug/logic bug	2022-05-01 00:37:32 -04:00
chhylp123	3064e1373b	better uovlp saving	2022-04-22 23:10:21 -04:00
chhylp123	9c6a3607d1	intergration correctio	2022-03-01 20:25:53 -05:00
chhylp123	0ce5a7ba5b	integration/print het sites	2022-01-17 18:29:48 -05:00
chhylp123	b640289b19	better read phasing	2021-12-07 22:47:52 -05:00
chhylp123	1e2a9518e5	print dup log	2021-11-29 15:11:02 -05:00
chhylp123	763634e1a9	kpt_dup	2021-11-28 19:35:32 -05:00
chhylp123	cb320b88f3	debug ul	2021-10-10 13:37:32 -04:00
chhylp123	7dd4a848b9	debug graph	2021-09-26 13:51:13 -04:00
chhylp123	ab80851b94	mempcpy -> memcpy	2021-09-12 17:43:43 -04:00
chhylp123	5e84db0ec9	adjust skew weight	2021-09-10 17:18:48 -04:00
chhylp123	809ca18dda	r373	2021-09-10 17:17:44 -04:00
chhylp123	17b5cb21d3	tmp macro	2021-08-30 09:30:48 -04:00
chhylp123	e230b3a55f	0.16.0 release	2021-08-22 21:58:00 -04:00
chhylp123	37b07e4d33	better seeding	2021-08-22 09:53:34 -04:00
chhylp123	bfff640a82	dp opt	2021-08-12 11:16:10 -04:00
chhylp123	6ea66e1290	resolve conflicts	2021-07-27 20:11:22 -04:00