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Author	SHA1	Message	Date
chhylp123	2e56ef7db5	apply coverage to purge_dups	2020-07-06 10:02:03 -04:00
chhylp123	428cc01d10	update link	2020-06-27 15:33:49 -04:00
chhylp123	3481a2fe2b	reorganize readme	2020-06-27 15:28:36 -04:00
Heng Li	f1e78720aa	more getting started; added NA12878 and links	2020-06-27 14:22:39 -04:00
chhylp123	e401f88e57	update test datasets	2020-06-27 13:03:46 -04:00
chhylp123	7a2e02cb77	fix typo	2020-06-27 12:56:02 -04:00
chhylp123	3a88079a6e	update typo	2020-06-27 12:44:12 -04:00
chhylp123	be26acc0e0	update readme	2020-06-27 12:43:14 -04:00
chhylp123	03c9028848	update readme	2020-06-27 12:36:33 -04:00
chhylp123	0071251c82	update README	2020-06-27 12:35:47 -04:00
chhylp123	39cf3f5dd8	update README	2020-06-27 12:34:41 -04:00
chhylp123	acba806ce1	update readme	2020-06-27 12:30:57 -04:00
chhylp123	46987e792a	update readme	2020-06-27 12:29:23 -04:00
chhylp123	1ec650e3e5	update readme	2020-06-27 12:27:16 -04:00
chhylp123	61657f4b29	update readme	2020-06-27 12:06:59 -04:00
chhylp123	35ee94f040	update README	2020-06-27 11:46:48 -04:00
chhylp123	ed137c2ac6	update readme	2020-06-27 11:38:08 -04:00
chhylp123	9cc97472d9	update readme	2020-06-27 11:25:21 -04:00
chhylp123	449950cddb	update readme	2020-06-27 10:57:22 -04:00
chhylp123	71f6c93d58	add options	2020-06-08 17:51:36 -04:00
Heng Li	97f6efc4da	r255: faster way to extract reads	2020-06-03 21:38:59 -04:00
Heng Li	eddbc61952	r254: added --ex-list and --ex-iter	2020-06-03 20:46:34 -04:00
Heng Li	e247c5f042	r253: Merge branch 'master' into dev-lh3	2020-05-23 21:43:22 -04:00
chhylp123	d36e1e7782	fixed bugs for trio-binning v0.7	2020-05-17 11:53:12 -04:00
Heng Li	f6ea45b58a	r251: always keep the best hits	2020-05-08 00:40:53 -04:00
Heng Li	e544360043	r250: fixed a bug in selecting top chains	2020-05-07 14:49:49 -04:00
Heng Li	3364a29b87	r249: make max overlap error rate CLI options	2020-05-06 01:16:50 -04:00
Heng Li	331e437c72	r248: contained reads not handled properly	2020-05-03 00:27:53 -04:00
chhylp123	7f6725ead3	expose purge_dups v0.6	2020-04-18 00:45:47 -04:00
Heng Li	85c57fd087	r246: made purge_dups optional for trio binning	2020-04-15 23:57:18 -04:00
chhylp123	57e979ca17	update for v0.5.0 v0.5	2020-04-14 00:10:58 -04:00
Heng Li	a06ee39433	r244: use 3 rounds of error correction by default	2020-04-13 19:51:15 -04:00
Heng Li	8907e9c64f	r243: Merge branch 'master' into dev-lh3	2020-04-13 15:18:21 -04:00
Heng Li	946a0f4115	r238: got rid of LIS chaining	2020-04-13 14:44:10 -04:00
Heng Li	b333addb6c	r237: fall back to DP chaining more often	2020-04-13 08:39:05 -04:00
chhylp123	4216384df6	update README v0.4	2020-04-12 20:59:49 -04:00
chhylp123	3120db1340	update README	2020-04-12 20:53:18 -04:00
chhylp123	69e8282b9a	update README	2020-04-12 20:51:18 -04:00
chhylp123	b93baa3cbd	update README	2020-04-12 20:46:54 -04:00
Heng Li	cc166c8ff5	r235: clarified option -f	2020-04-12 19:42:02 -04:00
Heng Li	cdd5f3e4e0	r234: fixed a bug for -r of an odder number	2020-04-12 19:25:53 -04:00
Heng Li	2d985569f1	Merge branch 'master' into dev-lh3	2020-04-12 18:57:42 -04:00
chhylp123	57b16e9e1f	fix warning	2020-04-12 17:46:30 -04:00
chhylp123	b245e9a760	fix warning	2020-04-12 17:46:20 -04:00
Heng Li	2c4de3a326	r230: the first anchor score was not adjusted	2020-04-12 10:39:42 -04:00
Heng Li	75a89c214d	r229: LIS score is still not exactly right	2020-04-12 10:19:28 -04:00
Heng Li	22b681b830	r228: resolved a compiler warning	2020-04-12 09:56:50 -04:00
Heng Li	4d7600361c	r226b: prefer unique anchors	2020-04-11 22:28:21 -04:00
Heng Li	c4397a9400	r226: more careful about ma_hit_t_alloc memory	2020-04-11 22:05:07 -04:00
Heng Li	e6b5b666a2	r224: versioning	2020-04-11 00:14:33 -04:00