Commit Graph
60 Commits
Author SHA1 Message Date
chhylp123 46acc8a2f6 version with wrong realignment 2022-11-07 02:35:26 -05:00
chhylp123 612c1ab712 cuttoff before debugging 2022-11-05 09:03:23 -04:00
chhylp123 e66c003b65 cleaner graph 2022-11-01 21:44:13 -04:00
chhylp123 f4b6223fde cutoff-r426-avoid-tip 2022-10-31 15:18:52 -04:00
chhylp123 3d1787e57a ul_refine_alignment 2022-10-29 17:15:19 -04:00
chhylp123 249bee7304 done contain clean 2022-10-27 17:05:46 -04:00
chhylp123 df3e0eeaa3 read extract 2022-10-19 13:23:25 -04:00
chhylp123 3d65bef9de adjusted chain sc 2022-10-09 18:14:07 -04:00
chhylp123 1d0562ebd1 done second alignment 2022-10-09 16:59:54 -04:00
chhylp123 2443e63ef5 done chaining 2022-10-08 14:51:03 -04:00
chhylp123 f92cef38f2 uodate gchain 2022-10-07 15:14:08 -04:00
chhylp123 68a74fb16d cigar collect 2022-10-02 14:38:49 -04:00
chhylp123 41437764f0 before window filling 2022-10-01 23:42:38 -04:00
chhylp123 bbd3394b4a lack final alignment 2022-10-01 19:53:02 -04:00
chhylp123 20a7dac82a backup for minimizer 2022-09-28 11:16:09 -04:00
chhylp123 236bc7b9ee backup for minimizer 2022-09-28 11:15:29 -04:00
chhylp123 a297105258 cal_exz_infi 2022-09-24 16:16:54 -04:00
chhylp123 38e00d2086 shared seeds 2022-09-23 22:17:38 -04:00
chhylp123 f4cc895fa0 update ed 2022-09-20 22:48:59 -04:00
chhylp123 4e7bb7eeb9 fix cigar 2022-09-18 23:17:58 -04:00
chhylp123 5da05f308f extend ed alignment 2022-09-13 17:29:27 -04:00
chhylp123 ee51a6dddc seperate alignment 2022-09-04 00:18:51 -04:00
chhylp123 cc16626dfa debug cigar_offset 2022-09-01 23:16:08 -04:00
chhylp123 7b89478b2e code clean 2022-08-28 02:39:05 -04:00
chhylp123 8b7ca5f0c3 revised HiFi phasing 2022-08-23 10:36:35 -04:00
chhylp123 33afa25398 UL graph done 2022-07-24 18:13:16 -04:00
chhylp123 138610b049 ul coordinates fixed 2022-06-25 21:52:56 -04:00
chhylp123 0a8c064734 read alignment extension debugging 2022-06-24 18:07:15 -04:00
chhylp123 a82e05c9f2 fix gap alignment extention 2022-06-23 22:11:28 -04:00
chhylp123 a21bc8a336 correction done 2022-06-18 22:42:01 -04:00
chhylp123 98bb89227e integer correction 2022-06-07 16:56:28 -04:00
chhylp123 8f1c59a5da all alignments have done/been improved 2022-05-16 20:58:29 -04:00
chhylp123 74ad15846e small bugs fixed 2022-05-14 22:07:55 -04:00
chhylp123 a2198891e7 smaller memory requirement 2022-05-12 16:15:58 -04:00
chhylp123 dd8888aa90 backup for memory issues 2022-05-05 19:35:06 -04:00
chhylp123 8a2bb0b112 memory debugging 2022-05-04 20:22:50 -04:00
chhylp123 e8399b18f1 fixed duplicated chaining issue 2022-05-03 17:35:43 -04:00
chhylp123 8138941a26 new realignment 2022-05-03 00:59:24 -04:00
chhylp123 fdf24d5589 fix memory bug/logic bug 2022-05-01 00:37:32 -04:00
chhylp123 3064e1373b better uovlp saving 2022-04-22 23:10:21 -04:00
chhylp123 d862711623 update graph chain 2022-04-16 22:17:52 -04:00
chhylp123 9c79bdfe7f UL_gdp 2022-04-13 16:15:03 -04:00
chhylp123 75f8048b18 UL g-alignment-v1 2022-03-26 18:51:46 -04:00
chhylp123 95eb2de2b9 roughly right chaining 2022-03-25 00:29:58 -04:00
chhylp123 60236cd967 debug uc_block_t 2022-03-21 22:00:30 -04:00
chhylp123 d3b9de4120 new gchain 2022-03-16 01:13:27 -04:00
chhylp123 9c6a3607d1 intergration correctio 2022-03-01 20:25:53 -05:00
chhylp123 0ce5a7ba5b integration/print het sites 2022-01-17 18:29:48 -05:00
chhylp123 7af0d85258 backup 2021-12-29 21:22:43 -05:00
chhylp123 dbc72b8c2d has bug multiple threads 2021-12-28 21:48:41 -05:00