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390 Commits 11 Branches 54 Tags
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Author SHA1 Message Date
chhylp123 71e91f3fc2 assgin disconnected parts 2021-04-28 20:27:43 -04:00
chhylp123 2fc2268268 phasing improvement 2021-04-27 21:35:49 -04:00
chhylp123 11430d6a3b r329 2021-04-25 14:50:36 -04:00
chhylp123 1456686665 fast weight 2021-04-25 06:05:23 -04:00
chhylp123 80877b9d0d Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 0.15.1 2021-04-24 07:00:05 -04:00
chhylp123 e52e897113 clean code 2021-04-24 00:17:08 -04:00
chhylp123 c972c64b39 add "n-weight" 2021-04-24 00:03:36 -04:00
chhylp123 7b07e355b7 bug fix for bubble scanning 2021-04-23 20:40:43 -04:00
chhylp123 a5b29b00bd topo phasing 2021-04-22 22:38:52 -04:00
chhylp123 278efaa876 block phasing 2021-04-21 10:58:58 -04:00
chhylp123 475ebb8075 keep long range information 2021-04-20 01:29:15 -04:00
chhylp123 39c19618e8 backup hic 2021-04-18 21:57:16 -04:00
Heng Li dfd7720f5a clarify that hifiasm doesn't do scaffolding 2021-04-17 16:28:12 -04:00
Heng Li 325bcebf9c Merge branch 'doc-update' 
I will not create another PR for this...
 2021-04-17 16:07:49 -04:00
Heng Li a0e4cbf80a minor changes 2021-04-17 16:07:34 -04:00
Heng Li 2464297370 Merge pull request #101 from chhylp123/doc-update 
Updated README
 2021-04-17 16:03:48 -04:00
Heng Li d9c47e21db updated README 2021-04-17 16:01:32 -04:00
chhylp123 49ead1ef35 bub disable 0.15 2021-04-17 04:23:32 -04:00
chhylp123 4bc43cec92 bug fixed 2021-04-17 00:31:19 -04:00
chhylp123 efacf8e796 bug fixing 2021-04-16 22:26:28 -04:00
chhylp123 f8ee584291 code clean 2021-04-16 20:28:48 -04:00
chhylp123 1e86e3dc02 best flipping 2021-04-14 18:50:20 -04:00
chhylp123 67c7218264 fix distance bug 2021-04-13 01:18:49 -04:00
chhylp123 36afbce9bc update unitig distance 2021-04-12 04:54:06 -04:00
chhylp123 7235f6426f back_up_hic 2021-04-11 10:59:26 -04:00
chhylp123 8f733750c4 variant calling 2021-04-10 21:58:53 -04:00
chhylp123 3218618bb4 keep k_trans 2021-04-08 23:58:12 -04:00
chhylp123 1a6f386823 backup trans_chain 2021-04-04 20:27:19 -04:00
chhylp123 8e75eb5a05 keep l1 trans 2021-04-04 14:00:28 -04:00
chhylp123 ebfc04d253 clean purge_dups 2021-04-03 16:26:58 -04:00
chhylp123 46e899bbae backup r321 2021-04-01 21:02:57 -04:00
chhylp123 0605aa1961 r317 2021-03-27 02:46:48 -04:00
chhylp123 24a19d7976 more accurate purging 2021-03-26 18:07:30 -04:00
chhylp123 d89a630ff3 update contig flipping 2021-03-25 03:03:19 -04:00
chhylp123 9e3e1e8bab update r351 0.14.2 2021-03-20 23:08:55 -04:00
chhylp123 ede6ccef00 fix misassemblies 2021-03-20 18:36:02 -04:00
chhylp123 e6e6dbf7b3 remove unnecessary bin files of Hi-C 0.14.1 2021-03-18 13:44:30 -04:00
chhylp123 2db42c8c00 update version number 2021-03-18 13:18:46 -04:00
chhylp123 98a04c168a update r313 2021-03-18 05:26:33 -04:00
chhylp123 3b4953521f trio bug fixed 2021-03-16 02:36:19 -04:00
chhylp123 8e4b98f0a6 bubble label 2021-03-14 03:25:19 -04:00
chhylp123 4c2ce6fc6b update trans chain 2021-03-10 22:46:50 -05:00
chhylp123 8aa87fdce8 purge_dups for high het 2021-03-08 20:52:11 -05:00
chhylp123 e8b92f7a40 backup for hic 2021-02-18 00:58:25 -05:00
chhylp123 d2ca12604b update r312 v0.14 2021-02-14 14:17:43 -05:00
chhylp123 d2bf15eba4 update r311 2021-02-14 13:32:02 -05:00
chhylp123 c47a1df4b0 fix chain bug 2021-02-14 12:47:51 -05:00
chhylp123 8855604d99 fix chain bug 2021-02-14 12:45:37 -05:00
chhylp123 dd48e3e15e Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2021-02-14 00:00:55 -05:00
chhylp123 02fa015e28 fix memory leak 2021-02-13 23:58:39 -05:00