31 Commits

Author	SHA1	Message	Date
chhylp123	89fcb35a64	for debugging	2020-10-11 14:32:33 -04:00
chhylp123	03cf0d475c	save bfore multiple overlaps	2020-08-23 08:46:33 -04:00
chhylp123	a25c37ed89	update k-mer peaks	2020-07-07 13:20:25 -04:00
Heng Li	c4397a9400	r226: more careful about ma_hit_t_alloc memory	2020-04-11 22:05:07 -04:00
chhylp123	87fc103e63	fix small bug	2020-04-06 02:03:34 -04:00
Heng Li	76de054331	r186: fixed memory leaks when loading from disk	2020-04-03 20:35:47 -04:00
Heng Li	992322f8e3	r185: fixed a few more memory leaks	2020-04-03 20:14:20 -04:00
Heng Li	d529dcea3f	r183: reorganized the major workflow	2020-04-03 13:34:07 -04:00
Heng Li	8f664f80ce	removed the hifiasm FASTA/Q reader	2020-03-26 16:26:54 -04:00
Heng Li	387d6336d8	read from read store	2020-03-26 15:17:49 -04:00
Heng Li	0dd927bdce	write to hifiasm read store	2020-03-26 14:23:17 -04:00
Heng Li	c3bbaa8a39	prepare for integration with hifiasm	2020-03-26 11:33:52 -04:00
chhylp123	c72d419711	for hifiasm 3.0	2020-03-22 16:54:32 -04:00
Haoyu Cheng	1523d10291	README	2019-12-28 04:45:53 -05:00
Heng Li	03c8899a34	fixed clang warnings	2019-12-26 09:40:35 -05:00
Haoyu Cheng	4ac9907e49	clean code	2019-12-26 02:26:24 -05:00
Haoyu Cheng	1ead2d3081	M50 improved	2019-12-23 09:37:26 -05:00
Haoyu Cheng	ada03ea388	final DP-based assembly	2019-11-13 20:18:11 -05:00
Haoyu Cheng	b57923d050	2019_9_5	2019-09-05 11:47:54 -04:00
Haoyu Cheng	d5327fe9ee	phasing	2019-09-02 10:30:14 -04:00
Haoyu Cheng	3c0c201cdf	improve speed	2019-08-26 02:22:20 -04:00
Haoyu Cheng	87873d6323	edit distance based error correction	2019-07-07 03:44:59 -04:00
Haoyu Cheng	b553f3ac5e	POA	2019-07-01 09:08:25 -04:00
Haoyu Cheng	7cebaf271b	Fix bug	2019-05-17 00:52:10 -04:00
Haoyu Cheng	17553e0a42	S/L index&reads	2019-05-16 21:14:50 -04:00
Haoyu Cheng	3c5799aa1b	Reduce memory requirement	2019-05-16 00:22:20 -04:00
Haoyu Cheng	45355a1103	Update position hash table	2019-05-14 17:02:03 -04:00
Haoyu Cheng	9302fc6058	Finish multiple thread counting	2019-05-12 02:16:20 -04:00
Haoyu Cheng	94bd75e576	Multiple threads reading	2019-05-11 00:19:16 -04:00
Haoyu Cheng	eee68408be	Using klib	2019-05-10 16:14:01 -04:00
Haoyu Cheng	0b209dd1e9	Input reads	2019-05-10 00:11:19 -04:00