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656 Commits 11 Branches 54 Tags
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Author SHA1 Message Date
chhylp123 a137a6b06f r878 2026-03-28 11:02:52 -04:00
chhylp123 e53fc786bd fix slow running time vs r726 2026-03-27 15:37:44 -04:00
chhylp123 aa4d12b1c6 simd version 0 2026-03-24 17:54:36 -04:00
chhylp123 9a2884f518 backup avx 2026-03-20 16:06:06 -04:00
chhylp123 5e5a1568ed error est funcion 2026-03-17 17:27:48 -04:00
chhylp123 c0478830e6 err_estimate 2026-03-01 08:51:53 -05:00
chhylp123 2fa4ef224f updating final overlapping 2026-02-17 18:07:49 -05:00
chhylp123 86311effb9 running time bug fixed 2026-02-16 10:46:28 -05:00
chhylp123 53e1b150c3 bug fixed for memory leak 2026-02-12 16:47:32 -05:00
chhylp123 67877deed3 r852 -> hybrid correction 2026-02-11 16:38:57 -05:00
chhylp123 d6ba102d42 r852 -> hybrid correction 2026-02-11 16:38:27 -05:00
chhylp123 ec9a8b222d add new options for ont assembly 0.25.0 2025-03-18 12:29:48 -04:00
chhylp123 b3b18ab1d0 r721 2025-03-14 01:40:21 -04:00
chhylp123 a96191560e eliminate SVs 2025-03-10 16:09:02 -04:00
chhylp123 79387d081f update readme 2025-01-31 20:34:12 -05:00
chhylp123 4733ef5011 update readme for ont 2025-01-31 20:27:22 -05:00
chhylp123 2c77b3c87e ont overlapping 2024-12-21 03:17:17 -05:00
chhylp123 3067771783 update for low coverge data 0.24.0 2024-12-16 06:25:31 -05:00
chhylp123 4889f1c6d8 fix high-coverage issue for ONT 0.23.0 2024-12-07 20:02:57 -05:00
chhylp123 dbdef7ff63 fix Print_H 0.22.0 2024-12-06 05:29:19 -05:00
chhylp123 184eb0a9fe fix the memory issue 2024-12-06 05:17:30 -05:00
chhylp123 676385cf8e ont simplex support 0.21.0 2024-11-27 13:27:13 -05:00
chhylp123 80fa5ed436 ONT EC 2024-11-12 23:53:29 -05:00
chhylp123 6de4e14782 update before fly HPC 2024-10-29 14:59:52 -04:00
chhylp123 ade800990e update for reference read hpc 2024-10-27 13:22:06 -04:00
chhylp123 fc98214321 update cite 0.20.0 2024-10-14 12:35:48 -04:00
chhylp123 382adb89c5 update README 2024-10-14 12:30:48 -04:00
chhylp123 6e33d972d0 update README 2024-10-14 12:29:35 -04:00
chhylp123 39a30a8d55 update README 2024-10-14 12:23:57 -04:00
chhylp123 b01614fd71 update README 2024-10-13 19:07:51 -04:00
chhylp123 63d51c3441 update README 2024-10-13 19:06:01 -04:00
chhylp123 49dd83df2a fix memory issue 2024-10-13 18:47:05 -04:00
chhylp123 e8b18560a5 0.20.0-r631 2024-10-09 17:09:10 -04:00
chhylp123 d5f8a8a6c0 new ec model 2024-06-30 19:53:51 -04:00
chhylp123 70fd9a0b1f keeping more telomeres 0.19.9 2024-05-06 04:02:20 -04:00
chhylp123 73dd5eeb5b gen_telo_end_t 2024-04-28 15:11:21 -04:00
chhylp123 358b090e20 fix scaf bugs 2024-04-27 07:58:49 -04:00
chhylp123 1ac574adc7 Merge pull request #553 from chhylp123/hifiasm_dev_debug 
fix bubble issue
0.19.8 		2023-11-06 00:10:06 -05:00
chhylp123 61ceb3a4e1 fix bubble issue 2023-11-06 00:09:38 -05:00
chhylp123 7f6d36b2c4 Merge pull request #540 from chhylp123/hifiasm_dev_debug 
fix bug for gen_contain_consensus_chain
 2023-10-22 13:24:28 -04:00
chhylp123 4ca8951f9d fix bug for gen_contain_consensus_chain 2023-10-22 13:23:27 -04:00
chhylp123 40e2a48706 Merge pull request #535 from chhylp123/hifiasm_dev_debug 
add scaffolding
0.19.7 		2023-10-10 12:41:10 -04:00
chhylp123 281ae6ba89 add scaffolding 2023-10-10 12:40:29 -04:00
chhylp123 e974b22ac0 Merge pull request #521 from chhylp123/hifiasm_dev_debug 
checkpoint for scaffolding
 2023-09-15 13:00:13 -04:00
chhylp123 c7685e6f19 checkpoint for scaffolding 2023-09-15 12:58:34 -04:00
chhylp123 94a284b430 Merge pull request #503 from chhylp123/hifiasm_dev_debug 
disable multiple assertions
0.19.6 		2023-08-17 19:59:13 -04:00
chhylp123 858b95a3bb disable multiple assertions 2023-08-17 19:58:35 -04:00
chhylp123 30d2ee065e Merge pull request #482 from chhylp123/hifiasm_dev_debug 
fix filter_short_ulalignments
 2023-07-19 19:12:10 -04:00
chhylp123 64091a76a5 fix filter_short_ulalignments 2023-07-19 19:11:37 -04:00
chhylp123 d91fc50058 Merge pull request #462 from chhylp123/hifiasm_dev_debug 
trio-dual/bug for hic phasing
 2023-05-31 14:55:16 -04:00