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378 Commits 11 Branches 54 Tags
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Author SHA1 Message Date
chhylp123 49ead1ef35 bub disable 2021-04-17 04:23:32 -04:00
chhylp123 4bc43cec92 bug fixed 2021-04-17 00:31:19 -04:00
chhylp123 efacf8e796 bug fixing 2021-04-16 22:26:28 -04:00
chhylp123 f8ee584291 code clean 2021-04-16 20:28:48 -04:00
chhylp123 1e86e3dc02 best flipping 2021-04-14 18:50:20 -04:00
chhylp123 67c7218264 fix distance bug 2021-04-13 01:18:49 -04:00
chhylp123 36afbce9bc update unitig distance 2021-04-12 04:54:06 -04:00
chhylp123 7235f6426f back_up_hic 2021-04-11 10:59:26 -04:00
chhylp123 8f733750c4 variant calling 2021-04-10 21:58:53 -04:00
chhylp123 3218618bb4 keep k_trans 2021-04-08 23:58:12 -04:00
chhylp123 1a6f386823 backup trans_chain 2021-04-04 20:27:19 -04:00
chhylp123 8e75eb5a05 keep l1 trans 2021-04-04 14:00:28 -04:00
chhylp123 ebfc04d253 clean purge_dups 2021-04-03 16:26:58 -04:00
chhylp123 46e899bbae backup r321 2021-04-01 21:02:57 -04:00
chhylp123 0605aa1961 r317 2021-03-27 02:46:48 -04:00
chhylp123 24a19d7976 more accurate purging 2021-03-26 18:07:30 -04:00
chhylp123 d89a630ff3 update contig flipping 2021-03-25 03:03:19 -04:00
chhylp123 9e3e1e8bab update r351 2021-03-20 23:08:55 -04:00
chhylp123 ede6ccef00 fix misassemblies 2021-03-20 18:36:02 -04:00
chhylp123 e6e6dbf7b3 remove unnecessary bin files of Hi-C 2021-03-18 13:44:30 -04:00
chhylp123 2db42c8c00 update version number 2021-03-18 13:18:46 -04:00
chhylp123 98a04c168a update r313 2021-03-18 05:26:33 -04:00
chhylp123 3b4953521f trio bug fixed 2021-03-16 02:36:19 -04:00
chhylp123 8e4b98f0a6 bubble label 2021-03-14 03:25:19 -04:00
chhylp123 4c2ce6fc6b update trans chain 2021-03-10 22:46:50 -05:00
chhylp123 8aa87fdce8 purge_dups for high het 2021-03-08 20:52:11 -05:00
chhylp123 e8b92f7a40 backup for hic 2021-02-18 00:58:25 -05:00
chhylp123 d2ca12604b update r312 2021-02-14 14:17:43 -05:00
chhylp123 d2bf15eba4 update r311 2021-02-14 13:32:02 -05:00
chhylp123 c47a1df4b0 fix chain bug 2021-02-14 12:47:51 -05:00
chhylp123 8855604d99 fix chain bug 2021-02-14 12:45:37 -05:00
chhylp123 dd48e3e15e Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2021-02-14 00:00:55 -05:00
chhylp123 02fa015e28 fix memory leak 2021-02-13 23:58:39 -05:00
chhylp123 18086e2c2e update 0.14-r310 2021-02-13 23:21:45 -05:00
chhylp123 5bb22f701c debug hic_hits 2021-02-09 18:40:49 -05:00
chhylp123 8467d58ef1 for v0.14 2021-02-09 13:00:23 -05:00
chhylp123 fda13cb0e4 update -z 2021-02-02 12:45:50 -05:00
chhylp123 02b9a3e109 hic multiple rounds 2021-01-31 18:49:08 -05:00
chhylp123 75ce7cd576 for v0.14-hic 2021-01-31 10:34:21 -05:00
chhylp123 a009026e65 fix bug for broken bubbles 2021-01-15 07:33:13 -05:00
chhylp123 88f5b11f04 bubble graph 2021-01-01 04:50:42 -05:00
chhylp123 c545fd84c7 hic bubble 2020-12-29 09:15:44 -05:00
chhylp123 5d506e82c9 phasing 2020-12-28 03:35:17 -05:00
chhylp123 53a655d802 init partition 2020-12-26 19:01:24 -05:00
chhylp123 f3e390eee8 for hic 2020-12-17 02:53:31 -05:00
chhylp123 73b5ef6769 bubble phasing 2020-11-21 20:50:31 -05:00
chhylp123 3a1a3750e9 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2020-11-16 01:49:07 -05:00
chhylp123 d87314a07e resolve conflict 2020-11-16 01:44:12 -05:00
chhylp123 ab073aa1fc hic first 2020-11-14 23:35:32 -05:00
chhylp123 35e3423f93 debug counting 2020-10-26 12:32:55 -04:00
chhylp123 0cc02035c5 HiC full index 2020-10-26 11:01:48 -04:00
chhylp123 b2b4624cea rerelease v0.13 2020-10-22 14:24:59 -04:00
chhylp123 de4163e881 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 
merge README
 2020-10-21 22:03:43 -04:00
chhylp123 53adde2b37 fix conflict 2020-10-21 22:01:07 -04:00
chhylp123 91d4915da7 release v0.13 2020-10-21 21:57:43 -04:00
chhylp123 04f94514ee fix circle 2020-10-19 19:51:17 -04:00
chhylp123 b1f844801a fix c->l bug 2020-10-19 16:39:53 -04:00
chhylp123 e5d503ea65 update polishing 2020-10-19 13:22:45 -04:00
chhylp123 9d4e3b3283 update polishing 2020-10-18 17:59:31 -04:00
chhylp123 753ea81194 reomve redundancy 2020-10-16 18:08:12 -04:00
chhylp123 89fcb35a64 for debugging 2020-10-11 14:32:33 -04:00
chhylp123 7a314d1ef3 fix type in README 2020-08-27 23:57:48 -04:00
chhylp123 55f95c0191 fix typo 2020-08-26 00:25:42 -04:00
chhylp123 b629dd8556 freeze-0.12-r304 2020-08-23 23:38:04 -04:00
chhylp123 0a2559e4a0 freeze-r304 2020-08-23 23:36:45 -04:00
chhylp123 724990cbe7 freeze-r304 2020-08-23 23:34:36 -04:00
chhylp123 03cf0d475c save bfore multiple overlaps 2020-08-23 08:46:33 -04:00
chhylp123 90d3cb69b9 fix version number 2020-08-05 18:04:47 -04:00
chhylp123 927d66262b rerelase v0.11 2020-08-05 17:50:53 -04:00
chhylp123 e031c70d0f Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2020-08-05 17:46:17 -04:00
chhylp123 a8aa37d201 fix makefile 2020-08-05 17:45:23 -04:00
chhylp123 320dc58127 fix bug at r_utg 2020-08-04 16:43:50 -04:00
chhylp123 ef5ba0cc2c update help/man 2020-07-31 21:32:02 -04:00
chhylp123 8bdc21799c update READMEN 2020-07-31 12:42:27 -04:00
chhylp123 7c385e219a update version number 2020-07-31 12:36:37 -04:00
chhylp123 d92f9519ae Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2020-07-31 12:34:49 -04:00
chhylp123 6ca9d01f06 update version number 2020-07-31 12:28:30 -04:00
chhylp123 23f0a8b020 Merge pull request #23 from chhylp123/hifiasm_high_het 
Hifiasm high het
 2020-07-31 12:24:43 -04:00
chhylp123 9d659fd2e0 update v0.10 2020-07-31 12:23:25 -04:00
chhylp123 ace34ae2b8 for high-het and coverage 2020-07-28 13:07:35 -04:00
chhylp123 952471657f change max coverage of pri-range 2020-07-18 17:40:58 -04:00
chhylp123 88ab801717 update HA_VERSION 2020-07-13 22:45:49 -04:00
chhylp123 a309e610ca resolve conflict 2020-07-13 22:44:40 -04:00
chhylp123 fda858f9e7 update coverage 2020-07-13 22:34:26 -04:00
chhylp123 c01b593d7c using coverage 2020-07-12 16:03:01 -04:00
chhylp123 a25c37ed89 update k-mer peaks 2020-07-07 13:20:25 -04:00
chhylp123 2e56ef7db5 apply coverage to purge_dups 2020-07-06 10:02:03 -04:00
chhylp123 428cc01d10 update link 2020-06-27 15:33:49 -04:00
chhylp123 3481a2fe2b reorganize readme 2020-06-27 15:28:36 -04:00
chhylp123 e401f88e57 update test datasets 2020-06-27 13:03:46 -04:00
chhylp123 7a2e02cb77 fix typo 2020-06-27 12:56:02 -04:00
chhylp123 3a88079a6e update typo 2020-06-27 12:44:12 -04:00
chhylp123 be26acc0e0 update readme 2020-06-27 12:43:14 -04:00
chhylp123 03c9028848 update readme 2020-06-27 12:36:33 -04:00
chhylp123 0071251c82 update README 2020-06-27 12:35:47 -04:00
chhylp123 39cf3f5dd8 update README 2020-06-27 12:34:41 -04:00
chhylp123 acba806ce1 update readme 2020-06-27 12:30:57 -04:00
chhylp123 46987e792a update readme 2020-06-27 12:29:23 -04:00
chhylp123 1ec650e3e5 update readme 2020-06-27 12:27:16 -04:00
chhylp123 61657f4b29 update readme 2020-06-27 12:06:59 -04:00