23 Commits

Author	SHA1	Message	Date
Haoyu Cheng	53d1692331	fix TODO	2019-12-26 12:42:50 -05:00
Heng Li	b7117af560	TAB to SPACE	2019-12-26 10:14:14 -05:00
Heng Li	b787ebe195	TAB to SPACEs	2019-12-26 10:11:44 -05:00
Heng Li	e6cdac9ea9	fixed a few harmless warnings	2019-12-26 10:06:58 -05:00
Heng Li	03c8899a34	fixed clang warnings	2019-12-26 09:40:35 -05:00
Haoyu Cheng	4ac9907e49	clean code	2019-12-26 02:26:24 -05:00
Haoyu Cheng	7f9c73507d	same haplotype chimeric reads detection	2019-12-24 14:43:12 -05:00
Haoyu Cheng	29fe35eb21	remove debug information	2019-12-24 10:37:40 -05:00
Haoyu Cheng	ea51239441	new chimeric detection	2019-12-24 05:03:59 -05:00
Haoyu Cheng	1ead2d3081	M50 improved	2019-12-23 09:37:26 -05:00
Haoyu Cheng	06556e4a9b	backup without bundaries processing	2019-12-17 16:58:20 -05:00
Haoyu Cheng	9c25075fed	update for base-level alignment	2019-12-12 03:06:47 -05:00
Haoyu Cheng	f1cde019a9	for break points at chr11	2019-12-12 00:31:24 -05:00
Haoyu Cheng	09603432e5	fix bugs for overlaps of different length	2019-12-09 17:07:11 -05:00
Haoyu Cheng	fca9c8db15	fix cross-chr bugs	2019-11-30 16:01:37 -05:00
Haoyu Cheng	f95691db3a	generate contig	2019-11-27 15:07:33 -05:00
Haoyu Cheng	cb26e0ecd4	unclean graph	2019-11-22 21:58:56 -05:00
Heng Li	db7e31f90d	Merge branch 'master' into new-mak	2019-11-22 15:01:28 -05:00
Haoyu Cheng	c7419d3e5e	ortholog-based cutting	2019-11-22 14:59:28 -05:00
Heng Li	b81b7f9213	Fixed a compiling error caused by UINT32_MAX	2019-11-22 14:36:37 -05:00
Haoyu Cheng	3425bd020b	more cutting methods	2019-11-20 15:43:44 -05:00
Haoyu Cheng	e8ff0c1dbc	backup	2019-11-19 01:32:39 -05:00
Haoyu Cheng	ada03ea388	final DP-based assembly	2019-11-13 20:18:11 -05:00