 chhylp123
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fbfcf72eb3
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Merge pull request #445 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
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2023-04-14 16:44:10 -04:00 |
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chhylp123
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0efcc14499
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fix chain spliting bug
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2023-04-14 16:43:41 -04:00 |
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chhylp123
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84e642d20d
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fix bubble on-the-fly
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2023-04-13 10:16:14 -04:00 |
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chhylp123
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b49b4a6cc7
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Merge pull request #438 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
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2023-04-06 23:18:26 -04:00 |
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chhylp123
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7e855ba5e2
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update README
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2023-04-06 23:16:59 -04:00 |
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chhylp123
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5df5892f33
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update for rescuing missing contigs
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2023-04-06 23:14:41 -04:00 |
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chhylp123
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00959dfdd9
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Merge pull request #430 from chhylp123/hifiasm_dev_debug
0.19.2->0.19.3
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2023-03-22 12:26:41 -04:00 |
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chhylp123
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503cd0f7cc
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0.19.2->0.19.3
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2023-03-22 12:25:39 -04:00 |
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chhylp123
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00ad7458c3
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Merge pull request #429 from chhylp123/hifiasm_dev_debug
avoid misassemblies; better polyploidy graph
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2023-03-22 12:24:31 -04:00 |
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chhylp123
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86b7dd424a
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avoid misassemblies; better polyploidy graph
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2023-03-22 12:23:53 -04:00 |
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chhylp123
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b763e1ff76
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Merge pull request #422 from chhylp123/hifiasm_dev_debug
disable postjoin for the ul assembly
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2023-03-13 15:44:45 -04:00 |
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chhylp123
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d4773a497f
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disable postjoin for the ul assembly
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2023-03-13 15:43:22 -04:00 |
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chhylp123
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7bb366688e
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Merge pull request #421 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
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2023-03-13 11:14:38 -04:00 |
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chhylp123
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f67faa9c34
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path-max and path-min to avoid misassemblies
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2023-03-13 11:13:57 -04:00 |
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chhylp123
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3407c7029e
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coverage adjustment for polyploidy
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2023-03-12 17:02:29 -04:00 |
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chhylp123
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f69166ee3b
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Merge pull request #420 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
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2023-03-10 23:44:34 -05:00 |
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chhylp123
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2218bac8aa
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clean output
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2023-03-10 23:42:29 -05:00 |
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chhylp123
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b533067835
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enable dbg-ovec
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2023-03-10 23:30:24 -05:00 |
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chhylp123
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fa663a9680
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Merge pull request #419 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
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2023-03-10 19:34:50 -05:00 |
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chhylp123
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384b721d84
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clean output
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2023-03-10 15:46:23 -05:00 |
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chhylp123
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8b79a3f22e
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disable function for tangles with low-coverage ul
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2023-03-10 15:34:10 -05:00 |
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chhylp123
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af4be8ca1a
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disable integer correction; disable contain dedup
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2023-03-10 09:12:07 -05:00 |
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chhylp123
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85c643e85d
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clean contained read; fixed for deep_graph_clean
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2023-03-07 15:28:24 -05:00 |
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chhylp123
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8a00c6c5f4
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Merge pull request #414 from chhylp123/hifiasm_dev_debug
better resolution for complex regions
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2023-02-27 09:36:46 -05:00 |
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chhylp123
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a0f2f70d91
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better resolution for complex regions
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2023-02-27 09:35:50 -05:00 |
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chhylp123
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ad4ff5550b
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Merge pull request #411 from chhylp123/hifiasm_dev_debug
bug fixed for mask calculation
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2023-02-24 00:37:36 -05:00 |
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chhylp123
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04f660fd8c
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bug fixed for mask calculation
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2023-02-24 00:36:52 -05:00 |
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chhylp123
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dd5f368fe6
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Merge pull request #409 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
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2023-02-21 20:23:31 -05:00 |
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chhylp123
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2b4b4f29e0
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r525
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2023-02-21 20:22:56 -05:00 |
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chhylp123
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8ea2d5a622
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r523-phasing-across chains
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2023-02-21 15:44:45 -05:00 |
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chhylp123
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27f77dca29
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Merge pull request #401 from chhylp123/hifiasm_dev_debug
0.18.6 -> 0.18.7
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2023-02-20 23:42:20 -05:00 |
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chhylp123
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7d5c793109
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additional cluster for phasing
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2023-02-20 23:38:27 -05:00 |
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chhylp123
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3abd3793fb
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clean graph alignment
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2023-02-20 14:50:55 -05:00 |
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chhylp123
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b55e4396d2
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prt_dbg_gfa -> before transitive reduction
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2023-02-17 11:00:15 -05:00 |
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chhylp123
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fc598d71f6
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0.18.6 -> 0.18.7
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2023-02-16 12:16:24 -05:00 |
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chhylp123
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026cf97d61
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Merge pull request #400 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
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2023-02-16 00:09:39 -05:00 |
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chhylp123
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286b897881
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r513
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2023-02-16 00:04:06 -05:00 |
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chhylp123
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f2da12a2ad
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508 —> futhur graph cleaning
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2023-02-12 22:49:12 -05:00 |
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chhylp123
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1166b92eb4
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r502->additional alignment
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2023-01-25 09:39:41 -05:00 |
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chhylp123
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1dd82e7729
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Merge pull request #387 from chhylp123/hifiasm_dev_debug
r500
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2023-01-23 15:29:16 -05:00 |
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chhylp123
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78ef43ce8e
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r500
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2023-01-23 15:28:43 -05:00 |
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chhylp123
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6c91e8b0a7
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Merge pull request #386 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
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2023-01-23 15:26:38 -05:00 |
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chhylp123
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dc07898f68
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Merge branch 'hifiasm_dev_debug' of https://github.com/chhylp123/hifiasm into hifiasm_dev_debug
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2023-01-23 15:25:37 -05:00 |
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chhylp123
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db2edc0ffb
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fix exit(1) for bin_only
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2023-01-23 15:25:01 -05:00 |
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chhylp123
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7280f132b1
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Merge pull request #383 from chhylp123/hifiasm_dev_debug
Merge pull request #348 from chhylp123/master
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2023-01-17 10:28:29 -05:00 |
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chhylp123
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8ff5a1370d
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Merge pull request #348 from chhylp123/master
auto merge
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2023-01-17 10:27:58 -05:00 |
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chhylp123
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f054b11e0e
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Merge pull request #382 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
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2023-01-17 04:53:24 -05:00 |
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chhylp123
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25d6857d44
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r499->false duplications
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2023-01-17 04:49:56 -05:00 |
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chhylp123
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46391eba26
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fix bubble popping bugs
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2023-01-15 22:29:20 -05:00 |
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chhylp123
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2969af129d
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Merge pull request #380 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
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2023-01-12 01:23:04 -05:00 |
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chhylp123
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2bf5119bb5
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update help information
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2023-01-12 01:22:34 -05:00 |
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chhylp123
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197cd4d77e
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0.18.3 -> 0.18.4
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2023-01-12 00:22:23 -05:00 |
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chhylp123
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7ad498f631
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r495-reuse misjoin detection
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2023-01-12 00:21:43 -05:00 |
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chhylp123
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0613b18af9
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r493 ->HiC/UL/Trans
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2023-01-11 20:38:45 -05:00 |
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chhylp123
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34948a093c
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Merge pull request #368 from chhylp123/hifiasm_dev_debug
fixed het/hom node bugs
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2022-12-08 03:07:43 -05:00 |
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chhylp123
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a674110b23
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fixed het/hom node bugs
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2022-12-08 03:07:14 -05:00 |
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chhylp123
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6743dcf204
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Merge pull request #363 from chhylp123/hifiasm_dev_debug
cleaner assembly graph
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2022-12-06 09:52:47 -05:00 |
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chhylp123
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a3b72457f0
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cleaner assembly graph
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2022-12-06 09:52:00 -05:00 |
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chhylp123
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5b928dfe1d
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Merge pull request #361 from chhylp123/hifiasm_dev_debug
r465
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2022-12-02 09:41:42 -05:00 |
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chhylp123
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786f8bdff0
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r465
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2022-12-02 09:40:25 -05:00 |
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chhylp123
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2400236f7c
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Merge pull request #358 from chhylp123/hifiasm_dev_debug
slightly better assembly graph
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2022-11-28 14:47:35 -05:00 |
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chhylp123
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a4d6cebc32
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slightly better assembly graph
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2022-11-28 14:42:48 -05:00 |
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chhylp123
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25dcaaabec
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Merge pull request #356 from chhylp123/hifiasm_dev_debug
Hifiasm dev debug
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2022-11-25 20:51:04 -05:00 |
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chhylp123
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9a454576e1
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fixed memory issue within gen_single_khit
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2022-11-25 20:49:14 -05:00 |
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chhylp123
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6de08fd91f
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debug assert
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2022-11-25 15:20:32 -05:00 |
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chhylp123
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deb31948e1
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Merge pull request #354 from chhylp123/hifiasm_dev_debug
fixed gap filling with UL
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2022-11-25 11:49:27 -05:00 |
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chhylp123
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fc76af1285
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fixed gap filling with UL
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2022-11-25 11:46:37 -05:00 |
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chhylp123
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b84e7ec328
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Merge pull request #351 from chhylp123/hifiasm_dev_debug
0.17.4-r455
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2022-11-17 18:06:11 -05:00 |
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chhylp123
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979d83f68d
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0.17.4-r455
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2022-11-17 18:05:35 -05:00 |
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chhylp123
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f9c5e09388
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Merge pull request #350 from chhylp123/hifiasm_dev_debug
r454
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2022-11-17 18:04:35 -05:00 |
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chhylp123
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9747c42123
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r454
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2022-11-17 18:02:52 -05:00 |
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chhylp123
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b4b53b8efd
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Merge pull request #349 from chhylp123/hifiasm_dev_debug
bugs for bubble/hom assembly
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2022-11-17 18:01:50 -05:00 |
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chhylp123
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553a8745cc
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bugs for bubble/hom assembly
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2022-11-17 18:01:08 -05:00 |
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chhylp123
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a1867ec9a2
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Merge pull request #347 from chhylp123/hifiasm_dev_debug
update README
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2022-11-17 12:29:12 -05:00 |
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chhylp123
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1afecdcecc
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update README
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2022-11-17 12:26:33 -05:00 |
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chhylp123
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66ad203018
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Merge pull request #346 from chhylp123/hifiasm_dev_debug
fix utg el bug
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2022-11-17 12:19:28 -05:00 |
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chhylp123
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152bae2dfb
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fix utg el bug
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2022-11-17 12:18:40 -05:00 |
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chhylp123
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22c44befa5
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Merge pull request #345 from chhylp123/hifiasm_dev_debug
merge UL
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2022-11-17 09:33:40 -05:00 |
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chhylp123
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9831afaf26
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code clean
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2022-11-17 09:31:56 -05:00 |
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chhylp123
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2c7b164f11
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tmp cache
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2022-11-10 19:37:52 -05:00 |
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chhylp123
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46acc8a2f6
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version with wrong realignment
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2022-11-07 02:35:26 -05:00 |
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chhylp123
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612c1ab712
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cuttoff before debugging
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2022-11-05 09:03:23 -04:00 |
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chhylp123
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e66c003b65
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cleaner graph
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2022-11-01 21:44:13 -04:00 |
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chhylp123
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f4b6223fde
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cutoff-r426-avoid-tip
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2022-10-31 15:18:52 -04:00 |
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chhylp123
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3d1787e57a
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ul_refine_alignment
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2022-10-29 17:15:19 -04:00 |
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chhylp123
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249bee7304
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done contain clean
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2022-10-27 17:05:46 -04:00 |
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chhylp123
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df3e0eeaa3
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read extract
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2022-10-19 13:23:25 -04:00 |
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chhylp123
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3d65bef9de
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adjusted chain sc
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2022-10-09 18:14:07 -04:00 |
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chhylp123
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1d0562ebd1
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done second alignment
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2022-10-09 16:59:54 -04:00 |
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chhylp123
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2443e63ef5
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done chaining
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2022-10-08 14:51:03 -04:00 |
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chhylp123
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f92cef38f2
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uodate gchain
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2022-10-07 15:14:08 -04:00 |
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chhylp123
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8a4d6a5f24
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done alignemnt
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2022-10-04 15:31:23 -04:00 |
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chhylp123
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68a74fb16d
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cigar collect
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2022-10-02 14:38:49 -04:00 |
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chhylp123
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41437764f0
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before window filling
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2022-10-01 23:42:38 -04:00 |
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chhylp123
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bbd3394b4a
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lack final alignment
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2022-10-01 19:53:02 -04:00 |
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chhylp123
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20a7dac82a
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backup for minimizer
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2022-09-28 11:16:09 -04:00 |
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chhylp123
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236bc7b9ee
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backup for minimizer
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2022-09-28 11:15:29 -04:00 |
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chhylp123
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4c873f9a66
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large extension
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2022-09-24 22:39:07 -04:00 |
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chhylp123
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a297105258
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cal_exz_infi
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2022-09-24 16:16:54 -04:00 |
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chhylp123
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38e00d2086
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shared seeds
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2022-09-23 22:17:38 -04:00 |
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