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• 026cf97d61 Merge pull request #400 from chhylp123/hifiasm_dev_debug 0.18.7 chhylp123 2023-02-16 00:09:39 -05:00
• 286b897881 r513 chhylp123 2023-02-16 00:04:06 -05:00
• f2da12a2ad 508 —> futhur graph cleaning chhylp123 2023-02-12 22:49:12 -05:00
• 1166b92eb4 r502->additional alignment chhylp123 2023-01-25 09:39:41 -05:00
• 1dd82e7729 Merge pull request #387 from chhylp123/hifiasm_dev_debug chhylp123 2023-01-23 15:29:16 -05:00
• 78ef43ce8e r500 chhylp123 2023-01-23 15:28:43 -05:00
• 6c91e8b0a7 Merge pull request #386 from chhylp123/hifiasm_dev_debug chhylp123 2023-01-23 15:26:38 -05:00
• dc07898f68 Merge branch 'hifiasm_dev_debug' of https://github.com/chhylp123/hifiasm into hifiasm_dev_debug chhylp123 2023-01-23 15:25:37 -05:00
• db2edc0ffb fix exit(1) for bin_only chhylp123 2023-01-23 15:25:01 -05:00
• 7280f132b1 Merge pull request #383 from chhylp123/hifiasm_dev_debug 0.18.5 chhylp123 2023-01-17 10:28:29 -05:00
• 8ff5a1370d Merge pull request #348 from chhylp123/master chhylp123 2023-01-17 10:27:58 -05:00
• f054b11e0e Merge pull request #382 from chhylp123/hifiasm_dev_debug chhylp123 2023-01-17 04:53:24 -05:00
• 25d6857d44 r499->false duplications chhylp123 2023-01-17 04:49:56 -05:00
• 46391eba26 fix bubble popping bugs chhylp123 2023-01-15 22:29:20 -05:00
• 2969af129d Merge pull request #380 from chhylp123/hifiasm_dev_debug 0.18.4 chhylp123 2023-01-12 01:23:04 -05:00
• 2bf5119bb5 update help information chhylp123 2023-01-12 01:22:34 -05:00
• 197cd4d77e 0.18.3 -> 0.18.4 chhylp123 2023-01-12 00:22:23 -05:00
• 7ad498f631 r495-reuse misjoin detection chhylp123 2023-01-12 00:21:43 -05:00
• 0613b18af9 r493 ->HiC/UL/Trans chhylp123 2023-01-11 20:38:45 -05:00
• 34948a093c Merge pull request #368 from chhylp123/hifiasm_dev_debug 0.18.2 chhylp123 2022-12-08 03:07:43 -05:00
• a674110b23 fixed het/hom node bugs chhylp123 2022-12-08 03:07:14 -05:00
• 6743dcf204 Merge pull request #363 from chhylp123/hifiasm_dev_debug 0.18.1 chhylp123 2022-12-06 09:52:47 -05:00
• a3b72457f0 cleaner assembly graph chhylp123 2022-12-06 09:52:00 -05:00
• 5b928dfe1d Merge pull request #361 from chhylp123/hifiasm_dev_debug 0.18.0 chhylp123 2022-12-02 09:41:42 -05:00
• 786f8bdff0 r465 chhylp123 2022-12-02 09:40:25 -05:00
• 2400236f7c Merge pull request #358 from chhylp123/hifiasm_dev_debug 0.17.7 chhylp123 2022-11-28 14:47:35 -05:00
• a4d6cebc32 slightly better assembly graph chhylp123 2022-11-28 14:42:48 -05:00
• 25dcaaabec Merge pull request #356 from chhylp123/hifiasm_dev_debug r460 chhylp123 2022-11-25 20:51:04 -05:00
• 9a454576e1 fixed memory issue within gen_single_khit chhylp123 2022-11-25 20:49:14 -05:00
• 6de08fd91f debug assert chhylp123 2022-11-25 15:20:32 -05:00
• deb31948e1 Merge pull request #354 from chhylp123/hifiasm_dev_debug r458 chhylp123 2022-11-25 11:49:27 -05:00
• fc76af1285 fixed gap filling with UL chhylp123 2022-11-25 11:46:37 -05:00
• b84e7ec328 Merge pull request #351 from chhylp123/hifiasm_dev_debug r455 chhylp123 2022-11-17 18:06:11 -05:00
• 979d83f68d 0.17.4-r455 chhylp123 2022-11-17 18:05:35 -05:00
• f9c5e09388 Merge pull request #350 from chhylp123/hifiasm_dev_debug chhylp123 2022-11-17 18:04:35 -05:00
• 9747c42123 r454 chhylp123 2022-11-17 18:02:52 -05:00
• b4b53b8efd Merge pull request #349 from chhylp123/hifiasm_dev_debug chhylp123 2022-11-17 18:01:50 -05:00
• 553a8745cc bugs for bubble/hom assembly chhylp123 2022-11-17 18:01:08 -05:00
• a1867ec9a2 Merge pull request #347 from chhylp123/hifiasm_dev_debug 0.17.3 chhylp123 2022-11-17 12:29:12 -05:00
• 1afecdcecc update README chhylp123 2022-11-17 12:26:33 -05:00
• 66ad203018 Merge pull request #346 from chhylp123/hifiasm_dev_debug chhylp123 2022-11-17 12:19:28 -05:00
• 152bae2dfb fix utg el bug chhylp123 2022-11-17 12:18:40 -05:00
• 22c44befa5 Merge pull request #345 from chhylp123/hifiasm_dev_debug chhylp123 2022-11-17 09:33:40 -05:00
• 9831afaf26 code clean chhylp123 2022-11-17 09:31:56 -05:00
• 2c7b164f11 tmp cache chhylp123 2022-11-10 19:37:52 -05:00
• 46acc8a2f6 version with wrong realignment chhylp123 2022-11-07 02:35:26 -05:00
• 612c1ab712 cuttoff before debugging chhylp123 2022-11-05 09:03:23 -04:00
• e66c003b65 cleaner graph chhylp123 2022-11-01 21:44:13 -04:00
• f4b6223fde cutoff-r426-avoid-tip chhylp123 2022-10-31 15:18:52 -04:00
• 3d1787e57a ul_refine_alignment chhylp123 2022-10-29 17:15:19 -04:00
• 249bee7304 done contain clean chhylp123 2022-10-27 17:05:46 -04:00
• df3e0eeaa3 read extract chhylp123 2022-10-19 13:23:25 -04:00
• 3d65bef9de adjusted chain sc chhylp123 2022-10-09 18:14:07 -04:00
• 1d0562ebd1 done second alignment chhylp123 2022-10-09 16:59:54 -04:00
• 2443e63ef5 done chaining chhylp123 2022-10-08 14:51:03 -04:00
• f92cef38f2 uodate gchain chhylp123 2022-10-07 15:14:08 -04:00
• 8a4d6a5f24 done alignemnt chhylp123 2022-10-04 15:31:23 -04:00
• 68a74fb16d cigar collect chhylp123 2022-10-02 14:38:49 -04:00
• 41437764f0 before window filling chhylp123 2022-10-01 23:42:38 -04:00
• bbd3394b4a lack final alignment chhylp123 2022-10-01 19:53:02 -04:00
• 20a7dac82a backup for minimizer chhylp123 2022-09-28 11:16:09 -04:00
• 236bc7b9ee backup for minimizer chhylp123 2022-09-28 11:15:29 -04:00
• 4c873f9a66 large extension chhylp123 2022-09-24 22:39:07 -04:00
• a297105258 cal_exz_infi chhylp123 2022-09-24 16:16:54 -04:00
• 38e00d2086 shared seeds chhylp123 2022-09-23 22:17:38 -04:00
• f4cc895fa0 update ed chhylp123 2022-09-20 22:48:59 -04:00
• 4e7bb7eeb9 fix cigar chhylp123 2022-09-18 23:17:58 -04:00
• 774c585562 infi ed chhylp123 2022-09-16 21:34:36 -04:00
• 54b733ef2f inner define chhylp123 2022-09-14 21:10:31 -04:00
• 69d0e18fe5 ed macro chhylp123 2022-09-14 15:38:55 -04:00
• 2300dc63bb extension chhylp123 2022-09-14 00:23:44 -04:00
• 5da05f308f extend ed alignment chhylp123 2022-09-13 17:29:27 -04:00
• ee51a6dddc seperate alignment chhylp123 2022-09-04 00:18:51 -04:00
• cc16626dfa debug cigar_offset chhylp123 2022-09-01 23:16:08 -04:00
• 7b89478b2e code clean chhylp123 2022-08-28 02:39:05 -04:00
• 8b7ca5f0c3 revised HiFi phasing chhylp123 2022-08-23 10:36:35 -04:00
• 54465dd9ac tangle resolved chhylp123 2022-08-16 23:35:56 -04:00
• 89e0d1aafa UL graph with graph cleaning chhylp123 2022-08-02 15:48:16 -04:00
• 91de382bde before contain keeping chhylp123 2022-07-27 10:41:57 -04:00
• 239f087af0 exact ul ovlp chhylp123 2022-07-26 20:57:34 -04:00
• 33afa25398 UL graph done chhylp123 2022-07-24 18:13:16 -04:00
• 138610b049 ul coordinates fixed chhylp123 2022-06-25 21:52:56 -04:00
• 0a8c064734 read alignment extension debugging chhylp123 2022-06-24 18:07:15 -04:00
• a82e05c9f2 fix gap alignment extention chhylp123 2022-06-23 22:11:28 -04:00
• 3934167770 integer correction update chhylp123 2022-06-20 01:51:19 -04:00
• a21bc8a336 correction done chhylp123 2022-06-18 22:42:01 -04:00
• 7cf6d82115 init poa chhylp123 2022-06-15 16:58:23 -04:00
• 98bb89227e integer correction chhylp123 2022-06-07 16:56:28 -04:00
• 8f1c59a5da all alignments have done/been improved chhylp123 2022-05-16 20:58:29 -04:00
• 74ad15846e small bugs fixed chhylp123 2022-05-14 22:07:55 -04:00
• 832e43fe3b smaller cigar size chhylp123 2022-05-12 18:31:31 -04:00
• a2198891e7 smaller memory requirement chhylp123 2022-05-12 16:15:58 -04:00
• dd8888aa90 backup for memory issues chhylp123 2022-05-05 19:35:06 -04:00
• 8a2bb0b112 memory debugging chhylp123 2022-05-04 20:22:50 -04:00
• e8399b18f1 fixed duplicated chaining issue chhylp123 2022-05-03 17:35:43 -04:00
• 8138941a26 new realignment chhylp123 2022-05-03 00:59:24 -04:00
• fdf24d5589 fix memory bug/logic bug chhylp123 2022-05-01 00:37:32 -04:00
• 3064e1373b better uovlp saving chhylp123 2022-04-22 23:10:21 -04:00
• d862711623 update graph chain chhylp123 2022-04-16 22:17:52 -04:00
• 9c79bdfe7f UL_gdp chhylp123 2022-04-13 16:15:03 -04:00