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• 2db42c8c00 update version number chhylp123 2021-03-18 13:18:46 -04:00
• 98a04c168a update r313 chhylp123 2021-03-18 05:26:33 -04:00
• 3b4953521f trio bug fixed chhylp123 2021-03-16 02:36:19 -04:00
• 8e4b98f0a6 bubble label chhylp123 2021-03-14 03:25:19 -04:00
• 4c2ce6fc6b update trans chain chhylp123 2021-03-10 22:46:50 -05:00
• 8aa87fdce8 purge_dups for high het chhylp123 2021-03-08 20:52:11 -05:00
• 8e98fb2276 Merge branch 'master' into dev-lh3 Heng Li 2021-03-02 19:27:44 -05:00
• e8b92f7a40 backup for hic chhylp123 2021-02-18 00:58:25 -05:00
• d2ca12604b update r312 v0.14 chhylp123 2021-02-14 14:17:43 -05:00
• d2bf15eba4 update r311 chhylp123 2021-02-14 13:32:02 -05:00
• c47a1df4b0 fix chain bug chhylp123 2021-02-14 12:47:51 -05:00
• 8855604d99 fix chain bug chhylp123 2021-02-14 12:45:37 -05:00
• dd48e3e15e Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly chhylp123 2021-02-14 00:00:55 -05:00
• 02fa015e28 fix memory leak chhylp123 2021-02-13 23:58:39 -05:00
• 18086e2c2e update 0.14-r310 chhylp123 2021-02-13 23:21:45 -05:00
• 284cd0784a Merge branch 'master' into hifiasm-v0.14 hifiasm-v0.14 chhylp123 2021-02-09 18:46:29 -05:00
• ceeb4562af fix hc_edge chhylp123 2021-02-09 18:44:06 -05:00
• 5bb22f701c debug hic_hits chhylp123 2021-02-09 18:40:49 -05:00
• 8467d58ef1 for v0.14 chhylp123 2021-02-09 13:00:23 -05:00
• 88f6261f7a Merge pull request #73 from molecules/patch-1 Heng Li 2021-02-09 00:39:13 -05:00
• 4f5d404e2a Added citation Christopher Bottoms 2021-02-08 14:19:17 -06:00
• 225b11a301 -z version number for_adapter chhylp123 2021-02-02 14:12:13 -05:00
• e5a8d0c1f5 for -z chhylp123 2021-02-02 13:19:06 -05:00
• d4be231329 for -z chhylp123 2021-02-02 13:15:59 -05:00
• 167f880377 for -z chhylp123 2021-02-02 13:09:29 -05:00
• fda13cb0e4 update -z chhylp123 2021-02-02 12:45:50 -05:00
• 02b9a3e109 hic multiple rounds chhylp123 2021-01-31 18:49:08 -05:00
• 75ce7cd576 for v0.14-hic chhylp123 2021-01-31 10:34:21 -05:00
• 205eadf346 r334: ignore a high-occ seed in a small window Heng Li 2021-01-23 16:25:52 -05:00
• 61befd357a r333: also subsample high-freq mz during indexing Heng Li 2021-01-22 23:17:25 -05:00
• 3b8f73fbab r332: increased mz sample dist from 200 to 500 Heng Li 2021-01-22 10:31:29 -05:00
• 8ff87685e5 updated Makefile dependencies Heng Li 2021-01-21 11:58:50 -05:00
• da672118e5 r330: unimap heuristic for mz sampling Heng Li 2021-01-21 11:05:37 -05:00
• a009026e65 fix bug for broken bubbles chhylp123 2021-01-15 07:33:13 -05:00
• 88f5b11f04 bubble graph chhylp123 2021-01-01 04:50:42 -05:00
• c545fd84c7 hic bubble chhylp123 2020-12-29 09:15:44 -05:00
• 5d506e82c9 phasing chhylp123 2020-12-28 03:35:17 -05:00
• 53a655d802 init partition chhylp123 2020-12-26 19:01:24 -05:00
• f3e390eee8 for hic chhylp123 2020-12-17 02:53:31 -05:00
• 73b5ef6769 bubble phasing chhylp123 2020-11-21 20:50:31 -05:00
• 3a1a3750e9 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly chhylp123 2020-11-16 01:49:07 -05:00
• d87314a07e resolve conflict chhylp123 2020-11-16 01:44:12 -05:00
• ab073aa1fc hic first chhylp123 2020-11-14 23:35:32 -05:00
• 02f0b5dd22 r329: a bit code cleanup Heng Li 2020-11-03 00:44:15 -05:00
• dcb583bd69 r328: use binomial heap for general cases Heng Li 2020-11-01 22:49:06 -05:00
• 6fa4d44426 r327: choose up to 3 high-freq minimizers Heng Li 2020-11-01 10:44:02 -05:00
• f02eb66e6a r326: select high-occ k-mers (experimental) Heng Li 2020-10-29 22:36:54 -04:00
• f37c4e29fa a bit refactoring for the next change Heng Li 2020-10-29 18:24:47 -04:00
• ef8c047559 removed unused ha_sketch Heng Li 2020-10-29 11:28:43 -04:00
• eddb8173da added --min-hist-cnt for #49 Heng Li 2020-10-26 16:28:30 -04:00
• 35e3423f93 debug counting chhylp123 2020-10-26 12:32:55 -04:00
• 0cc02035c5 HiC full index chhylp123 2020-10-26 11:01:48 -04:00
• b2b4624cea rerelease v0.13 v0.13 chhylp123 2020-10-22 14:24:59 -04:00
• de4163e881 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly merge README chhylp123 2020-10-21 22:03:43 -04:00
• 53adde2b37 fix conflict chhylp123 2020-10-21 22:01:07 -04:00
• 91d4915da7 release v0.13 chhylp123 2020-10-21 21:57:43 -04:00
• 04f94514ee fix circle chhylp123 2020-10-19 19:51:17 -04:00
• b1f844801a fix c->l bug chhylp123 2020-10-19 16:39:53 -04:00
• e5d503ea65 update polishing chhylp123 2020-10-19 13:22:45 -04:00
• 9d4e3b3283 update polishing chhylp123 2020-10-18 17:59:31 -04:00
• 753ea81194 reomve redundancy chhylp123 2020-10-16 18:08:12 -04:00
• 89fcb35a64 for debugging chhylp123 2020-10-11 14:32:33 -04:00
• 8cb131dca3 added a "Why hifiasm?" section Heng Li 2020-10-05 01:01:58 -04:00
• 00128c3076 Fixed the wrong download link Heng Li 2020-10-04 23:01:16 -04:00
• 519d5b1eb1 Updated the download link Heng Li 2020-10-04 23:00:27 -04:00
• 7a314d1ef3 fix type in README chhylp123 2020-08-27 23:57:48 -04:00
• 55f95c0191 fix typo v0.12 chhylp123 2020-08-26 00:25:42 -04:00
• b629dd8556 freeze-0.12-r304 chhylp123 2020-08-23 23:38:04 -04:00
• 0a2559e4a0 freeze-r304 chhylp123 2020-08-23 23:36:45 -04:00
• 724990cbe7 freeze-r304 chhylp123 2020-08-23 23:34:36 -04:00
• 03cf0d475c save bfore multiple overlaps chhylp123 2020-08-23 08:46:33 -04:00
• 90d3cb69b9 fix version number v0.11 chhylp123 2020-08-05 18:04:47 -04:00
• 927d66262b rerelase v0.11 chhylp123 2020-08-05 17:50:53 -04:00
• e031c70d0f Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly chhylp123 2020-08-05 17:46:17 -04:00
• a8aa37d201 fix makefile chhylp123 2020-08-05 17:45:23 -04:00
• ebedae2a21 updated Makefile Heng Li 2020-08-05 17:33:14 -04:00
• 320dc58127 fix bug at r_utg chhylp123 2020-08-04 16:43:50 -04:00
• ef5ba0cc2c update help/man v0.10 chhylp123 2020-07-31 21:32:02 -04:00
• 8bdc21799c update READMEN chhylp123 2020-07-31 12:42:27 -04:00
• 7c385e219a update version number chhylp123 2020-07-31 12:36:37 -04:00
• d92f9519ae Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly chhylp123 2020-07-31 12:34:49 -04:00
• 6ca9d01f06 update version number chhylp123 2020-07-31 12:28:30 -04:00
• 23f0a8b020 Merge pull request #23 from chhylp123/hifiasm_high_het chhylp123 2020-07-31 12:24:43 -04:00
• 9d659fd2e0 update v0.10 hifiasm_high_het chhylp123 2020-07-31 12:23:25 -04:00
• ace34ae2b8 for high-het and coverage chhylp123 2020-07-28 13:07:35 -04:00
• 94008c02ac Re-release hifiasm-0.9 (r289) v0.9 Heng Li 2020-07-19 14:44:28 -04:00
• 1e4d67ee64 r288: reorganized command line help messages Heng Li 2020-07-19 13:43:30 -04:00
• ff4ef89fe3 r287: fixed the INT32_MAX compiling error Heng Li 2020-07-19 11:22:23 -04:00
• 952471657f change max coverage of pri-range chhylp123 2020-07-18 17:40:58 -04:00
• 88ab801717 update HA_VERSION chhylp123 2020-07-13 22:45:49 -04:00
• a309e610ca resolve conflict chhylp123 2020-07-13 22:44:40 -04:00
• fda858f9e7 update coverage chhylp123 2020-07-13 22:34:26 -04:00
• c01b593d7c using coverage chhylp123 2020-07-12 16:03:01 -04:00
• a25c37ed89 update k-mer peaks chhylp123 2020-07-07 13:20:25 -04:00
• 2e56ef7db5 apply coverage to purge_dups chhylp123 2020-07-06 10:02:03 -04:00
• 309e885365 Release hifiasm-0.8 (r279) v0.8 Heng Li 2020-06-27 19:56:49 -04:00
• 5cb42cafc2 more README changees Heng Li 2020-06-27 19:25:38 -04:00
• 428cc01d10 update link chhylp123 2020-06-27 15:33:49 -04:00
• 3481a2fe2b reorganize readme chhylp123 2020-06-27 15:28:36 -04:00
• f1e78720aa more getting started; added NA12878 and links Heng Li 2020-06-27 14:22:39 -04:00