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0.1.0

0.14.1

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0.16.0

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0.2.0

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N0.1.0

r455

r458

r460

v0.10

v0.11

v0.12

v0.13

v0.14

v0.3

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Mono Color

• 19648873b9 exposed mz_win and high_factor to CLI Heng Li 2020-03-27 21:39:57 -04:00
• cb20e50219 disabled progress report Heng Li 2020-03-27 17:05:56 -04:00
• 7079a9f306 working on mid-sized test example Heng Li 2020-03-27 16:55:28 -04:00
• bd89bd500c add disabled debugging code Heng Li 2020-03-27 14:03:36 -04:00
• 30a70bc307 fixed wrong coordinate Heng Li 2020-03-27 13:45:09 -04:00
• 1bb174a04e fixed missing read names Heng Li 2020-03-27 12:51:08 -04:00
• 78e8f2f28a finish ha_get_new_candidates() Heng Li 2020-03-27 11:46:53 -04:00
• 8dbb4140bd removed k_mer_pos_list_alloc Heng Li 2020-03-27 11:27:36 -04:00
• 293f4b6b58 to replace get_new_candidates(); UNFINISHED! Heng Li 2020-03-27 11:21:08 -04:00
• 7271c106e4 reverted to the older k_mer_hit definition Heng Li 2020-03-27 10:40:31 -04:00
• 10ed8b36ec implemented ha_pt_get() Heng Li 2020-03-26 23:00:00 -04:00
• 4aa4ebaf96 more unused code Heng Li 2020-03-26 17:57:39 -04:00
• 814a3705e2 removed a few other unused functions Heng Li 2020-03-26 16:33:28 -04:00
• 8f664f80ce removed the hifiasm FASTA/Q reader Heng Li 2020-03-26 16:26:54 -04:00
• 79bc553da6 removed hifiasm hash table index Heng Li 2020-03-26 16:10:01 -04:00
• 387d6336d8 read from read store Heng Li 2020-03-26 15:17:49 -04:00
• 0dd927bdce write to hifiasm read store Heng Li 2020-03-26 14:23:17 -04:00
• c3bbaa8a39 prepare for integration with hifiasm Heng Li 2020-03-26 11:33:52 -04:00
• 60d94790a2 fixed a memory leak Heng Li 2020-03-25 23:52:09 -04:00
• ff8194d291 position indexing apparently working Heng Li 2020-03-25 23:44:15 -04:00
• 716713685c renamed files for code cleanup Heng Li 2020-03-25 19:59:17 -04:00
• 5a6b97145a rename for naming consistency Heng Li 2020-03-25 19:25:57 -04:00
• e116f6e09d position table; unfinished Heng Li 2020-03-25 19:17:07 -04:00
• 585bbbe213 a bit code cleanup Heng Li 2020-03-25 10:31:38 -04:00
• f8351e557a counting minimizers exactly Heng Li 2020-03-25 09:50:32 -04:00
• 3e897560c4 minimizer filtering apparently works Heng Li 2020-03-25 00:38:13 -04:00
• 84361ba6dd dense minimizer apparently works Heng Li 2020-03-24 23:05:38 -04:00
• 3341cf20ba backup Heng Li 2020-03-24 21:57:23 -04:00
• f70257c260 support HPC k-mer Heng Li 2020-03-24 19:58:21 -04:00
• ec750cdd7d NOT WORKING! find hom and het peaks Heng Li 2020-03-24 18:50:52 -04:00
• 2a848d254a k-mer histogram Heng Li 2020-03-24 16:02:23 -04:00
• 64edb06e08 NOT WORKING!!! added all k-mer counter Heng Li 2020-03-24 12:29:46 -04:00
• 398e73022b NOT WORKING!!! removed small_hash_table Heng Li 2020-03-24 00:57:00 -04:00
• 59a9d62df9 NOT WORKING!!! backup only Heng Li 2020-03-24 00:44:56 -04:00
• e6ef2fb56f put the rev bit on readID Heng Li 2020-03-23 10:55:30 -04:00
• 3a27d104c6 replaced khash with khashl Heng Li 2020-03-23 10:21:46 -04:00
• cfb0a5c8ec reduced the position to 32 bits Heng Li 2020-03-23 09:54:42 -04:00
• 3c1d3cf6a1 disable debug v0.3 chhylp123 2020-03-23 00:25:20 -04:00
• ee2573a05c Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly chhylp123 2020-03-22 18:32:47 -04:00
• d3cb016aba Update README chhylp123 2020-03-22 18:31:59 -04:00
• 670bd10093 update man chhylp123 2020-03-22 18:01:04 -04:00
• 90e290636a code clean chhylp123 2020-03-22 17:06:36 -04:00
• c72d419711 for hifiasm 3.0 chhylp123 2020-03-22 16:54:32 -04:00
• 4536141b9a update README for Redwood chhylp123 2020-03-04 14:58:04 -05:00
• 6ae51c84f6 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 0.2.0 chhylp123 2020-02-07 15:00:14 -05:00
• 6246132702 update for 0.2.0 chhylp123 2020-02-07 14:52:14 -05:00
• 0a3fdd9599 Fixed a minor typo in README Heng Li 2020-01-14 16:50:30 -05:00
• 6edf54048c update N50 N0.1.0 chhylp123 2020-01-14 11:09:38 -05:00
• c63ce670f7 improved N50 chhylp123 2020-01-14 10:46:35 -05:00
• 387c64c5fc test contribution chhylp123 2020-01-07 03:49:15 +08:00
• 67f1173eb6 update readme Haoyu Cheng 2020-01-07 03:40:53 +08:00
• cb065dfa0e Merge pull request #4 from lh3/update-readme 0.1.0 Heng Li 2020-01-04 12:56:52 -05:00
• 8b36dcb3d3 description of the output Heng Li 2020-01-04 12:56:06 -05:00
• 562a990934 remove tmp files Haoyu Cheng 2020-01-04 12:27:52 +08:00
• e7fa1554aa update readme Haoyu Cheng 2020-01-04 12:16:35 +08:00
• 39fb70b49c update readme Haoyu Cheng 2020-01-04 12:15:33 +08:00
• 03c06781a0 update README Haoyu Cheng 2020-01-04 12:13:35 +08:00
• 180785a7ce update readme Haoyu Cheng 2020-01-04 12:11:21 +08:00
• 34ac643038 update README Haoyu Cheng 2020-01-04 12:10:08 +08:00
• e17bed62c0 update readme Haoyu Cheng 2020-01-04 12:07:24 +08:00
• 7ecd489edc update man-page Haoyu Cheng 2020-01-04 12:01:35 +08:00
• d8416873f3 upadate man-page and readme Haoyu Cheng 2020-01-04 11:54:08 +08:00
• 1e46798bfb update readme and help information Haoyu Cheng 2020-01-02 08:58:50 +08:00
• 36b42c2d83 Merge pull request #3 from lh3/lh3-fix chhylp123 2019-12-31 07:06:11 -05:00
• 1e71947a23 bumped version number to 0.1.0 Heng Li 2019-12-30 12:20:07 -05:00
• 4ea12b651f fixed a typo Heng Li 2019-12-30 12:17:15 -05:00
• 3a61b1b0b0 changed the output file names Heng Li 2019-12-30 12:01:54 -05:00
• 30eddefc57 main() should return 0 on success Heng Li 2019-12-30 10:44:13 -05:00
• cb487a761c fix bugs Haoyu Cheng 2019-12-29 10:10:10 -05:00
• 4dd637127f fix bugs Haoyu Cheng 2019-12-29 02:38:10 -05:00
• 8325685359 README Haoyu Cheng 2019-12-28 16:57:36 -05:00
• 443a9449b7 update result Haoyu Cheng 2019-12-28 16:56:05 -05:00
• 4095fc2839 update result Haoyu Cheng 2019-12-28 16:55:21 -05:00
• 4998cd87c7 update results Haoyu Cheng 2019-12-28 16:46:34 -05:00
• a60a2d7ddd update help Haoyu Cheng 2019-12-28 16:38:21 -05:00
• b65774fef5 README Haoyu Cheng 2019-12-28 16:20:39 -05:00
• 8f21e7943f fix words Haoyu Cheng 2019-12-28 16:19:50 -05:00
• ea248038c6 Update for overlaps Haoyu Cheng 2019-12-28 16:18:50 -05:00
• 93ea81b2d2 README Haoyu Cheng 2019-12-28 05:09:53 -05:00
• ba926db6ad README Haoyu Cheng 2019-12-28 05:08:45 -05:00
• 54c80d8400 README Haoyu Cheng 2019-12-28 05:07:35 -05:00
• 64d5ae10d4 README Haoyu Cheng 2019-12-28 05:03:12 -05:00
• 14899c5f09 README Haoyu Cheng 2019-12-28 05:00:44 -05:00
• f9e805854e README Haoyu Cheng 2019-12-28 04:55:07 -05:00
• 1523d10291 README Haoyu Cheng 2019-12-28 04:45:53 -05:00
• 8f549c1c16 README Haoyu Cheng 2019-12-26 17:08:37 -05:00
• 94fb1342a6 README Haoyu Cheng 2019-12-26 17:03:42 -05:00
• 24af570698 README Haoyu Cheng 2019-12-26 16:58:29 -05:00
• 0b0dd2f741 README Haoyu Cheng 2019-12-26 16:51:27 -05:00
• f1428835f1 README Haoyu Cheng 2019-12-26 16:46:08 -05:00
• 991c4c3d22 README Haoyu Cheng 2019-12-26 16:44:28 -05:00
• d72f9b9c3a readme Haoyu Cheng 2019-12-26 16:32:26 -05:00
• 220dbd2a51 README Haoyu Cheng 2019-12-26 16:13:07 -05:00
• c7553d7c8d README Haoyu Cheng 2019-12-26 16:12:24 -05:00
• 10ea89197b README Haoyu Cheng 2019-12-26 16:11:29 -05:00
• 6ddce421ad REDME Haoyu Cheng 2019-12-26 16:05:25 -05:00
• ede8eb747b README Haoyu Cheng 2019-12-26 16:01:08 -05:00
• f89d4d7201 README Haoyu Cheng 2019-12-26 15:58:44 -05:00
• 3fa499ecde README Haoyu Cheng 2019-12-26 15:57:04 -05:00
• 350bda5f76 README Haoyu Cheng 2019-12-26 15:56:07 -05:00