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Mono Color

• c5a191baeb README Haoyu Cheng 2019-12-26 15:55:39 -05:00
• defebb73fd README Haoyu Cheng 2019-12-26 15:54:09 -05:00
• a8df77962d README Haoyu Cheng 2019-12-26 15:49:32 -05:00
• 4da7500e8b README Haoyu Cheng 2019-12-26 15:47:46 -05:00
• cd16ad6617 README Haoyu Cheng 2019-12-26 15:45:24 -05:00
• a1e32ee2a2 README Haoyu Cheng 2019-12-26 15:43:58 -05:00
• cd2300907a README Haoyu Cheng 2019-12-26 15:32:11 -05:00
• 57b30d967a README Haoyu Cheng 2019-12-26 15:23:57 -05:00
• 53aba41bdd README Haoyu Cheng 2019-12-26 15:20:33 -05:00
• 16ae545ee1 README Haoyu Cheng 2019-12-26 14:56:21 -05:00
• f2c46290b2 README Haoyu Cheng 2019-12-26 14:52:13 -05:00
• 9ef00f749a update README Haoyu Cheng 2019-12-26 14:44:11 -05:00
• dc67fc6d2b test readme Haoyu Cheng 2019-12-26 14:31:00 -05:00
• 53d1692331 fix TODO Haoyu Cheng 2019-12-26 12:42:50 -05:00
• 7c2c0a5af3 Merge pull request #2 from lh3/fix-warnings chhylp123 2019-12-26 12:21:52 -05:00
• b7117af560 TAB to SPACE Heng Li 2019-12-26 10:14:14 -05:00
• b787ebe195 TAB to SPACEs Heng Li 2019-12-26 10:11:44 -05:00
• e6cdac9ea9 fixed a few harmless warnings Heng Li 2019-12-26 10:06:58 -05:00
• 7fb4646beb added gitignore Heng Li 2019-12-26 09:41:15 -05:00
• 03c8899a34 fixed clang warnings Heng Li 2019-12-26 09:40:35 -05:00
• 907458fad2 remove extra file Haoyu Cheng 2019-12-26 02:27:43 -05:00
• 4ac9907e49 clean code Haoyu Cheng 2019-12-26 02:26:24 -05:00
• 7f9c73507d same haplotype chimeric reads detection Haoyu Cheng 2019-12-24 14:43:12 -05:00
• 29fe35eb21 remove debug information Haoyu Cheng 2019-12-24 10:37:40 -05:00
• ea51239441 new chimeric detection Haoyu Cheng 2019-12-24 05:03:59 -05:00
• 1ead2d3081 M50 improved Haoyu Cheng 2019-12-23 09:37:26 -05:00
• 06556e4a9b backup without bundaries processing Haoyu Cheng 2019-12-17 16:58:20 -05:00
• 90195293f1 for backup Haoyu Cheng 2019-12-12 20:12:52 -05:00
• 9c25075fed update for base-level alignment Haoyu Cheng 2019-12-12 03:06:47 -05:00
• f1cde019a9 for break points at chr11 Haoyu Cheng 2019-12-12 00:31:24 -05:00
• 09603432e5 fix bugs for overlaps of different length Haoyu Cheng 2019-12-09 17:07:11 -05:00
• fca9c8db15 fix cross-chr bugs Haoyu Cheng 2019-11-30 16:01:37 -05:00
• f95691db3a generate contig Haoyu Cheng 2019-11-27 15:07:33 -05:00
• cb26e0ecd4 unclean graph Haoyu Cheng 2019-11-22 21:58:56 -05:00
• 2a8e0dc254 Merge pull request #1 from lh3/new-mak chhylp123 2019-11-22 15:13:20 -05:00
• db7e31f90d Merge branch 'master' into new-mak Heng Li 2019-11-22 15:01:28 -05:00
• c7419d3e5e ortholog-based cutting Haoyu Cheng 2019-11-22 14:59:28 -05:00
• cb3eecc5e0 added klib_unused to suppress kseq warnings Heng Li 2019-11-22 14:47:54 -05:00
• 8ad76667f4 new Makefile Heng Li 2019-11-22 14:43:37 -05:00
• b81b7f9213 Fixed a compiling error caused by UINT32_MAX Heng Li 2019-11-22 14:36:37 -05:00
• 3425bd020b more cutting methods Haoyu Cheng 2019-11-20 15:43:44 -05:00
• e8ff0c1dbc backup Haoyu Cheng 2019-11-19 01:32:39 -05:00
• ada03ea388 final DP-based assembly Haoyu Cheng 2019-11-13 20:18:11 -05:00
• d6c6a1fa11 DP Haoyu Cheng 2019-09-07 21:25:11 -04:00
• b57923d050 2019_9_5 Haoyu Cheng 2019-09-05 11:47:54 -04:00
• d5327fe9ee phasing Haoyu Cheng 2019-09-02 10:30:14 -04:00
• 3c0c201cdf improve speed Haoyu Cheng 2019-08-26 02:22:20 -04:00
• 6802d873cf fix insertion bug Haoyu Cheng 2019-07-18 03:02:58 -04:00
• ad8a4c9c65 full error correction Haoyu Cheng 2019-07-14 21:13:50 -04:00
• f508762557 resure alignment Haoyu Cheng 2019-07-12 10:18:25 -04:00
• 3d88530385 debug Haoyu Cheng 2019-07-09 22:15:58 -04:00
• 4eddb02dbd prefilter Haoyu Cheng 2019-07-09 15:11:04 -04:00
• 1892b4d2db prefilter Haoyu Cheng 2019-07-08 01:06:36 -04:00
• 87873d6323 edit distance based error correction Haoyu Cheng 2019-07-07 03:44:59 -04:00
• b553f3ac5e POA Haoyu Cheng 2019-07-01 09:08:25 -04:00
• 30161f1544 overlap Haoyu Cheng 2019-06-23 23:28:28 -04:00
• e3924b5c08 Change stupid merge function Haoyu Cheng 2019-05-19 05:02:28 -04:00
• 63509bcb7f Accelerate overlap merge Haoyu Cheng 2019-05-18 11:36:42 -04:00
• ddd96d8456 Merge overlap Haoyu Cheng 2019-05-18 01:03:24 -04:00
• 87a6091ffe Fix bug Haoyu Cheng 2019-05-17 00:54:04 -04:00
• 7cebaf271b Fix bug Haoyu Cheng 2019-05-17 00:52:10 -04:00
• 17553e0a42 S/L index&reads Haoyu Cheng 2019-05-16 21:14:50 -04:00
• 3c5799aa1b Reduce memory requirement Haoyu Cheng 2019-05-16 00:22:20 -04:00
• 45355a1103 Update position hash table Haoyu Cheng 2019-05-14 17:02:03 -04:00
• df18b5af76 Update modimers Haoyu Cheng 2019-05-12 04:03:54 -04:00
• 9302fc6058 Finish multiple thread counting Haoyu Cheng 2019-05-12 02:16:20 -04:00
• 94bd75e576 Multiple threads reading Haoyu Cheng 2019-05-11 00:19:16 -04:00
• eee68408be Using klib Haoyu Cheng 2019-05-10 16:14:01 -04:00
• 0b209dd1e9 Input reads Haoyu Cheng 2019-05-10 00:11:19 -04:00
• 8d7672e708 test README Haoyu Cheng 2019-05-09 16:05:32 -04:00
• acc52991a7 Add main.cpp Haoyu Cheng 2019-05-09 16:03:46 -04:00
• 4a95a2b5ab Initial commit chhylp123 2019-05-09 15:34:58 -04:00