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hifiasm-v0.14

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0.1.0

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0.14.2

0.15

0.15.1

0.15.2

0.15.3

0.15.4

0.15.5

0.16.0

0.16.1

0.17.3

0.17.7

0.18.0

0.18.1

0.18.2

0.18.4

0.18.5

0.18.7

0.18.8

0.18.9

0.19.0

0.19.1

0.19.2

0.19.3

0.19.4

0.19.5

0.19.6

0.19.7

0.19.8

0.19.9

0.2.0

0.20.0

0.21.0

0.22.0

0.23.0

0.24.0

0.25.0

N0.1.0

r455

r458

r460

v0.10

v0.11

v0.12

v0.13

v0.14

v0.3

v0.4

v0.5

v0.6

v0.7

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Mono Color

• 75f8048b18 UL g-alignment-v1 chhylp123 2022-03-26 18:51:46 -04:00
• 95eb2de2b9 roughly right chaining chhylp123 2022-03-25 00:29:58 -04:00
• 60236cd967 debug uc_block_t chhylp123 2022-03-21 22:00:30 -04:00
• d3b9de4120 new gchain chhylp123 2022-03-16 01:13:27 -04:00
• 9c6a3607d1 intergration correctio chhylp123 2022-03-01 20:25:53 -05:00
• 0ce5a7ba5b integration/print het sites chhylp123 2022-01-17 18:29:48 -05:00
• 7af0d85258 backup chhylp123 2021-12-29 21:22:43 -05:00
• dbc72b8c2d has bug multiple threads chhylp123 2021-12-28 21:48:41 -05:00
• 8a0ec3d575 change ug extraction chhylp123 2021-12-12 20:59:48 -05:00
• 9ec286e64e new ul chhylp123 2021-12-11 14:55:36 -05:00
• b640289b19 better read phasing chhylp123 2021-12-07 22:47:52 -05:00
• 1e2a9518e5 print dup log chhylp123 2021-11-29 15:11:02 -05:00
• 763634e1a9 kpt_dup chhylp123 2021-11-28 19:35:32 -05:00
• 26aacdcc2c correct gchains chhylp123 2021-10-14 15:33:16 -04:00
• 908b4f3786 bug fix chhylp123 2021-10-10 14:47:16 -04:00
• cb320b88f3 debug ul chhylp123 2021-10-10 13:37:32 -04:00
• 7dd4a848b9 debug graph chhylp123 2021-09-26 13:51:13 -04:00
• ed814abf35 before branch chhylp123 2021-09-16 17:16:30 -04:00
• ab80851b94 mempcpy -> memcpy 0.16.1 chhylp123 2021-09-12 17:43:43 -04:00
• 5e84db0ec9 adjust skew weight chhylp123 2021-09-10 17:18:48 -04:00
• 809ca18dda r373 chhylp123 2021-09-10 17:17:44 -04:00
• 17b5cb21d3 tmp macro chhylp123 2021-08-30 09:30:48 -04:00
• e230b3a55f 0.16.0 release 0.16.0 chhylp123 2021-08-22 21:58:00 -04:00
• 37b07e4d33 better seeding chhylp123 2021-08-22 09:53:34 -04:00
• bfff640a82 dp opt chhylp123 2021-08-12 11:16:10 -04:00
• 6ea66e1290 resolve conflicts chhylp123 2021-07-27 20:11:22 -04:00
• 0c81c341d5 update r351 chhylp123 2021-07-27 19:51:20 -04:00
• 3c8a933b8a Merge remote-tracking branch 'origin/dev-lh3' chhylp123 2021-07-27 19:50:29 -04:00
• f7c3a7c998 fix typo 0.15.5 chhylp123 2021-07-26 00:29:30 -04:00
• 321acb2d8a update for r350 chhylp123 2021-07-26 00:16:00 -04:00
• b14f894160 seperate purgeing and hom peak chhylp123 2021-07-25 11:23:06 -04:00
• 6a043540b5 update README chhylp123 2021-07-22 01:16:28 -04:00
• 62b7418257 update 0.15.5 chhylp123 2021-07-22 00:59:52 -04:00
• a531a4cbda debugging for huge datasets chhylp123 2021-06-27 07:48:29 -04:00
• 0410662841 print misjoin debug 0.15.4 chhylp123 2021-06-23 09:49:44 -04:00
• 5a400af39d r342-misjoin chhylp123 2021-06-19 14:09:09 -04:00
• e3b721c29a r340 chhylp123 2021-06-16 16:44:08 -04:00
• 5b0a0c85ef ovlp filter chhylp123 2021-06-13 17:35:09 -04:00
• 7e06dec2d0 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 0.15.3 chhylp123 2021-06-09 20:11:54 -04:00
• 9dc530cbfb low hamming for sampels with low het rate chhylp123 2021-06-09 20:10:50 -04:00
• ca67e7a9b3 rollback chhylp123 2021-05-31 18:16:20 -04:00
• aa164949f2 backup phasing chhylp123 2021-05-31 04:19:05 -04:00
• e774a83be2 debug mbg chhylp123 2021-05-30 09:02:25 -04:00
• a39f01f4d8 haplotype popping chhylp123 2021-05-24 19:43:50 -04:00
• 9e6dde7fb2 backpup chhylp123 2021-05-22 10:48:49 -04:00
• 46c0157f79 new ovlp collect chhylp123 2021-05-22 10:47:58 -04:00
• 626787ab8a complex cleaning chhylp123 2021-05-20 17:03:18 -04:00
• 5c1680e998 fix missed ug when bubble popping chhylp123 2021-05-19 10:16:23 -04:00
• b12e008416 new somatic variant popping chhylp123 2021-05-19 09:52:40 -04:00
• be8e1e3117 sc debug chhylp123 2021-05-17 00:12:41 -04:00
• 2bbac713ef init scaffold chhylp123 2021-05-15 11:45:05 -04:00
• 4105dd360e correction chhylp123 2021-05-11 13:01:06 -04:00
• 1f7d3f46c9 removed clang Heng Li 2021-05-10 22:23:22 -04:00
• d4cc3551e8 added code of conduct Heng Li 2021-05-10 21:49:48 -04:00
• 8187f177ec Merge branch 'master' of github.com:chhylp123/hifiasm Heng Li 2021-05-10 21:48:31 -04:00
• c9b61dcd78 added CI Heng Li 2021-05-10 21:48:18 -04:00
• 7918396d21 collect contig alignment + renew_utg bug fixed chhylp123 2021-05-09 17:47:50 -04:00
• 03adce6202 k-mer idx for par chhylp123 2021-05-06 21:31:40 -04:00
• 9ea4f6917f resolve centromere chhylp123 2021-05-06 07:59:51 -04:00
• 24e5453781 bug fix 0.15.2 chhylp123 2021-05-02 14:16:36 -04:00
• 9c205c8271 resove tangle by hic chhylp123 2021-04-30 22:44:48 -04:00
• 9b31d47379 exit(0) for --help chhylp123 2021-04-28 23:10:51 -04:00
• 71e91f3fc2 assgin disconnected parts chhylp123 2021-04-28 20:27:43 -04:00
• 2fc2268268 phasing improvement chhylp123 2021-04-27 21:35:49 -04:00
• 11430d6a3b r329 chhylp123 2021-04-25 14:50:36 -04:00
• 1456686665 fast weight chhylp123 2021-04-25 06:05:23 -04:00
• 80877b9d0d Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 0.15.1 chhylp123 2021-04-24 07:00:05 -04:00
• e52e897113 clean code chhylp123 2021-04-24 00:17:08 -04:00
• c972c64b39 add "n-weight" chhylp123 2021-04-24 00:03:36 -04:00
• 7b07e355b7 bug fix for bubble scanning chhylp123 2021-04-23 20:40:43 -04:00
• a5b29b00bd topo phasing chhylp123 2021-04-22 22:38:52 -04:00
• 278efaa876 block phasing chhylp123 2021-04-21 10:58:58 -04:00
• 475ebb8075 keep long range information chhylp123 2021-04-20 01:29:15 -04:00
• 39c19618e8 backup hic chhylp123 2021-04-18 21:57:16 -04:00
• dfd7720f5a clarify that hifiasm doesn't do scaffolding Heng Li 2021-04-17 16:28:12 -04:00
• 325bcebf9c Merge branch 'doc-update' Heng Li 2021-04-17 16:07:49 -04:00
• a0e4cbf80a minor changes Heng Li 2021-04-17 16:07:34 -04:00
• 2464297370 Merge pull request #101 from chhylp123/doc-update Heng Li 2021-04-17 16:03:48 -04:00
• d9c47e21db updated README doc-update Heng Li 2021-04-17 16:01:32 -04:00
• 49ead1ef35 bub disable 0.15 chhylp123 2021-04-17 04:23:32 -04:00
• 4bc43cec92 bug fixed chhylp123 2021-04-17 00:31:19 -04:00
• efacf8e796 bug fixing chhylp123 2021-04-16 22:26:28 -04:00
• f8ee584291 code clean chhylp123 2021-04-16 20:28:48 -04:00
• 1e86e3dc02 best flipping chhylp123 2021-04-14 18:50:20 -04:00
• 67c7218264 fix distance bug chhylp123 2021-04-13 01:18:49 -04:00
• 36afbce9bc update unitig distance chhylp123 2021-04-12 04:54:06 -04:00
• 7235f6426f back_up_hic chhylp123 2021-04-11 10:59:26 -04:00
• 8f733750c4 variant calling chhylp123 2021-04-10 21:58:53 -04:00
• 3218618bb4 keep k_trans chhylp123 2021-04-08 23:58:12 -04:00
• 1a6f386823 backup trans_chain chhylp123 2021-04-04 20:27:19 -04:00
• 8e75eb5a05 keep l1 trans chhylp123 2021-04-04 14:00:28 -04:00
• ebfc04d253 clean purge_dups chhylp123 2021-04-03 16:26:58 -04:00
• 46e899bbae backup r321 chhylp123 2021-04-01 21:02:57 -04:00
• 0605aa1961 r317 chhylp123 2021-03-27 02:46:48 -04:00
• 24a19d7976 more accurate purging chhylp123 2021-03-26 18:07:30 -04:00
• d89a630ff3 update contig flipping chhylp123 2021-03-25 03:03:19 -04:00
• 9e3e1e8bab update r351 0.14.2 chhylp123 2021-03-20 23:08:55 -04:00
• ede6ccef00 fix misassemblies chhylp123 2021-03-20 18:36:02 -04:00
• 863b20773a Merge branch 'master' into dev-lh3 dev-lh3 Heng Li 2021-03-18 16:11:43 -04:00
• e6e6dbf7b3 remove unnecessary bin files of Hi-C 0.14.1 chhylp123 2021-03-18 13:44:30 -04:00